Bob, Angel, Christopher,
Thanks for all your help so far with the gzipped files.
Still not working.
Any advice would be GREATLY appreciated.
Thanks in advance,
David
————
Here is what I’ve done (thanks Bob, for these instructions):
1. Opened JSmol.min.js and added js/Jmol2.js to it.
2. Saved that file as: Jmol.js and placed in directory above my jsmol exhibits
3. Also placed the folders “java” and “j2s” and “php” in the directory above
the exhibits
4. Edited the new Jmol.js file (combined as above) to point to the
http://[...]/jsmol.php file on our server (in the php directory)
My exhibit files (e.g. molecule.html) have contain the following:
<script type="text/javascript">
// USER'S SETTINGS:
var side = "left"
var w = 60
var JmolPath = "../"
//[…]
//[…]
<script type="text/javascript">
jmolInitialize(JmolPath, "JmolAppletSigned0.jar")
jmolSetAppletColor("#ffffff") //same as page; you could choose another if you
prefer
jmolApplet("100%", 'background [xffffff]; load 1ehz.pdb;
// […]
So, my directory structure looks like:
Jmol (folder)
* j2s (folder)
* Java (folder)
* php (folder)
* Jmol.js (file)
* Some Exhibit (folder)
* somemolecule.html (exhibit file)
* xxxx.pbd
Exhibits with xxxx.pdb unzipped load molecules well.
Exhibits with xxxx.pdb gzipped yield an “unrecognized file format” error
message.
——
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
David J. Marcey
Fletcher Jones Professor of Developmental Biology
CLU, 60 West Olsen Road., MC#3700
Thousand Oaks, CA 91360
mar...@clunet.edu
ph: 805-493-3263
fax: 805-493-3392
~~~~~~~~~~~~~~~~~~
The Online Macromolecular Museum:
www.clunet.edu/BioDev/omm/gallery.htm
~~~~~~~~~~~~~~~~~~
Cinelectures in Biology:
www.youtube.com/user/dmflyboy
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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