Thanks for the suggestion! I tried several versions of your suggestion. Adding a readyFunction to Info worked (where Info.readyFunction points to function rather than just the function name worked, but I couldn't make messaagecallback work. I tried pointing Info.messagecallback to both the function and the function name and JSmol didn't seem to want to call it.
So, I'm inclined to believe that: - I'm not loading some piece of JSmol that needs to be loaded, or - I'm not spelling something correctly, or - i'm not including something that turns on the message callback behavior. I suppose that it's possible that there is a bug in JSmol, but that seems unlikely. I replaced the JSmol.min.js with JSmol.full.js and I guess the next step is to investigate what the message script command doesn't like about what I'm asking it to do. If you have any suggestions on a debugging technique for isolating this issue to a particular section of code, I'd be most appreciative. thanks, --Chuck On Feb 7, 2014, at 4:01 PM, Rolf Huehne <[email protected]> wrote: > Am 07.02.2014 20:38, schrieb Charles Harrison Shubert: >> Hi, >> >> I'm clearly not reading the documentation correctly and I'm missing >> something. I want to use the JSmol callback functionality. What am I >> doing wrong? >> >> Thanks, >> >> --Chuck >> >> My javascript: >> >> function init_jsmol(state) { >> >> // … other initialization >> >> Jmol.setXHTML(model.ids.id_jsmol); >> >> var Info = {}; >> Info.script = session.modelControl.getActiveScript(state); >> Info.j2sPath = model.jsmol.j2sPath; >> Info.disableInitialConsole = true; >> Info.disableJ2SLoadMonitor = true; >> >> jmolObject = Jmol.getApplet(model.ids.id_jsmol, Info); >> >> // … other initialization >> } >> >> function myMessageCallback(one, two) { >> console.info("I'm in myMessageCallback: " + one); >> console.info("I'm in myMessageCallback: " + two); >> } >> >> function getJSmolInfo(state) { // called from another part of my code. >> try { >> console.info("getJSmolInfo entry"); >> >> script(";set messageCallback 'myMessageCallback';"); >> script(";define chucksel '[ALA]1:A.O or [ALA]1:A.C'; select chucksel; >> color atoms pink;"); >> script("message 'hi ho';"); >> > I never tried to set the message callback by using Jmol Script. What > works for me (e.g.: > http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping-rh.pl?CODE=1deh&APPLET=html5) > > is setting it in the 'Info' object like this: > > ------------------------------------------------------- > Info = { > use: "JAVA HTML5", > width: "600", > height: "600", > debug: false, > color: "black", > j2sPath: > "http://jenalib.fli-leibniz.de/ImgLibPDB/jmol/jmol-14.0.5/jsmol/j2s";, > jarPath: "/ImgLibPDB/jmol/jmol-14.0.5/jsmol/java", > jarFile: "JmolAppletSigned.jar", > isSigned: "true", > disableJ2SLoadMonitor: true, > disableInitialConsole: true, > addSelectionOptions: false, > serverURL: "/ImgLibPDB/jmol/jmol-14.0.5/jsmol/php/jsmol.php", > script: "", > messagecallback: "_jmolMessageCallback", > allowjavascript: true > }; > > function _jmolMessageCallback(app,msg) { /* jmol message > callback, reverse logging into textarea */ > msg = "" + msg; /* convert callback message into string > (recommended by other Jmol users) */ > log_monitor.unshift(msg); > if (document.getElementById("jmol_monitor").value.length > > 8000) { > log_monitor.pop(); > } > document.getElementById("jmol_monitor").value = > log_monitor.join("\n"); > > if (msg.match(/([\d,]+) atoms selected/)) { /* */ > var selection_count_tag = > document.getElementById("selection_count"); > > selection_count_tag.replaceChild(document.createTextNode(RegExp.$1), > selection_count_tag.childNodes[0]); > document.getElementById("selection_count").innerHtml=RegExp.$1; > } > } > ------------------------------------------------------- > > So it should work if you add this to your 'Info' initialization: > > Info.messagecallback = "myMessageCallback"; > > Regards, > Rolf > -- > > Rolf Huehne > Postdoc > > Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) > Beutenbergstrasse 11 > 07745 Jena, Germany > > Phone: +49 3641 65 6205 > Fax: +49 3641 65 6210 > E-Mail: [email protected] > Website: http://www.fli-leibniz.de > > Scientific Director: Prof. Dr. K. Lenhard Rudolph > Head of Administration: Dr. Daniele Barthel > Chairman of Board of Trustees: Dennys Klein > > VAT No: DE 153 925 464 > Register of Associations: No. 296, Amtsgericht Jena > Tax Number: 162/141/08228 > > > ------------------------------------------------------------------------------ > Managing the Performance of Cloud-Based Applications > Take advantage of what the Cloud has to offer - Avoid Common Pitfalls. > Read the Whitepaper. > http://pubads.g.doubleclick.net/gampad/clk?id=121051231&iu=/4140/ostg.clktrk > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ Managing the Performance of Cloud-Based Applications Take advantage of what the Cloud has to offer - Avoid Common Pitfalls. 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