MOUSE The disappearance has something to do with rotation by mouse. I can zoom just fine with mouse. Rotation commands into the Console, e.g. 'rotate y 90' work just fine, as does 'spin on'. But the moment (or soon after) you start rotating with the mouse, caffeine disappears.
I can load 1d66 or 7ahl and they also disappear after a bit more rotation than needed to make caffeine disappear. MAC SAFARI ERROR CONSOLE In Safari, opening the Error Console/Web Inspector (Develop Menu, enabled in Safari Preferences, Advanced, checkbox at bottom) makes rotation jerky. When you close the Error Console, rotation immediately speeds up and becomes smooth again. Opening the Error Console and getting the jerky rotation postpones the disappearance. No error messages appear in the Safari Error Console/Web Inspector during disappearance. By the way I'm running Mac OS 10.9.2 also, just lost track thinking it was still 10.9.1. MAC FIREFOX I still see the disappearance in Firefox on OS 10.9.2. Opening Tools, Web Developer, Browser Console has no effect on smoothness of rotation. No error appears there during disappearance. WINDOWS CHROME I DO SEE THE DISAPPEARANCE in Windows 7 Chrome ("up to date")! Saw caffeine vaporize in 3 tests, including after one reload and one browser restart. WINDOWS FIREFOX I confirm that the disappearance does not happen in Win7 Firefox ("up to date") with caffeine, 1d66. INTERNET EXPLORER 11 (latest update) Rotation of caffeine is jerky in Internet Explorer (and its javascript is too slow in general for use with JSmol). However, I did not see caffeine disappear with lots of rotation. Eric At 4/13/14, you wrote: >I can confirm these observations: > >At ><http://chemapps.stolaf.edu/jmol/jsmol/test2.htm>http://chemapps.stolaf.edu/jmol/jsmol/test2.htm > >caffeine disappear when rotated with the mouse >on Mac (OS X, 10.9.2) in Firefox (28) and in Safari (7.0.3) > >The same site/molecule works fin in Firefox(28)/Win 7. > >PM > > > > > >On 4/13/2014 10:09 PM, Philip Bays wrote: >>I see the same issue on my iMac running 10.9.2, >>Safari 7.0.3 or Firefox 27.0.1 and JSmol .4.10 >>running locally or over the network. Have >>not tried other browsers. Its as if something >>is going on in the background. For me the >>manipulation of the structure is quite jerky, >>freezes, then is jerky, and finally disappears. >> >>I am having a different issue with Safari as >>well. I run a local network at home. All >>browsers work fine using [network >>name].local/~[account name]/ except for >>Safari. I get a cannot connect to server >>error. I am required to use the ip address >>approach as the URL. This arose with OSX 9.2. >>All other browsers are fine using the local >>network name, and I can access it with a PC or my iPad using the network name. >> >> >>On Apr 13, 2014, at 9:56 PM, Otis Rothenberger >><<mailto:osrot...@chemagic.com>osrot...@chemagic.com> wrote: >> >>>I'm running 14.1.12_2014.3.21 and it's OK Mac >>>Safari, Chrome, and Firefox. This is OS 10.9.2 Mavericks. >>> >>>I've been keeping a close eye on iPad, and >>>this version of JSmol runs really well on iPad Air and iPad 2. >>> >>>Otis >>>-- >>>Otis Rothenberger >>><mailto:o...@chemagic.com>o...@chemagic.com >>>http://chemagic.com >>> >>> >>>On Apr 13, 2014, at 8:05 PM, Eric Martz >>><<mailto:ema...@microbio.umass.edu>ema...@microbio.umass.edu> wrote: >>> >>>> From the online URL >>>> <http://chemapps.stolaf.edu/jmol/jsmol/test2.htm>http://chemapps.stolaf.edu/jmol/jsmol/test2.htm >>>> >>>>In addition to Firefox, I also see the disappearance with slight >>>>rotation in Safari and Chrome (again, on Mac OS 10.9.1 Mavericks). >>>> >>>>Those browsers will not run test2.htm from local files (network error >>>>is reported), so I can only test them from the server. >>>> >>>>Eric >>>> >>>> >>>>------------------------------------------------------------------------------ >>>>Learn Graph Databases - Download FREE O'Reilly Book >>>>"Graph Databases" is the definitive new guide to graph databases and their >>>>applications. Written by three acclaimed leaders in the field, >>>>this first edition is now available. Download your free book today! >>>><http://p.sf.net/sfu/NeoTech>http://p.sf.net/sfu/NeoTech >>>>_______________________________________________ >>>>Jmol-users mailing list >>>><mailto:Jmol-users@lists.sourceforge.net>Jmol-users@lists.sourceforge.net >>>>https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>>------------------------------------------------------------------------------ >>>Learn Graph Databases - Download FREE O'Reilly Book >>>"Graph Databases" is the definitive new guide to graph databases and their >>>applications. Written by three acclaimed leaders in the field, >>>this first edition is now available. Download your free book today! >>><http://p.sf.net/sfu/NeoTech_______________________________________________>http://p.sf.net/sfu/NeoTech_______________________________________________ >>>Jmol-users mailing list >>><mailto:Jmol-users@lists.sourceforge.net>Jmol-users@lists.sourceforge.net >>>https://lists.sourceforge.net/lists/listinfo/jmol-users >> >>Philip Bays >>Emeritus Professor of Chemistry >>Saint Mary's College >>Notre Dame, IN 46556 >><mailto:pb...@saintmarys.edu>pb...@saintmarys.edu >> >> >> >> >> >>------------------------------------------------------------------------------ >>Learn Graph Databases - Download FREE O'Reilly Book >>"Graph Databases" is the definitive new guide to graph databases and their >>applications. Written by three acclaimed leaders in the field, >>this first edition is now available. Download your free book today! >><http://p.sf.net/sfu/NeoTech>http://p.sf.net/sfu/NeoTech >> >> >>_______________________________________________ >>Jmol-users mailing list >><mailto:Jmol-users@lists.sourceforge.net>Jmol-users@lists.sourceforge.net >>https://lists.sourceforge.net/lists/listinfo/jmol-users > >------------------------------------------------------------------------------ >Learn Graph Databases - Download FREE O'Reilly Book >"Graph Databases" is the definitive new guide to graph databases and their >applications. Written by three acclaimed leaders in the field, >this first edition is now available. Download your free book today! >http://p.sf.net/sfu/NeoTech >_______________________________________________ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. Written by three acclaimed leaders in the field, this first edition is now available. Download your free book today! http://p.sf.net/sfu/NeoTech _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users