On Fri, Sep 5, 2014 at 8:46 AM, <chris.w...@stfc.ac.uk> wrote:
> Hi Bob,
>
>
>
> I should have probably said that this is an EM map, not a crystallography
> one!
>
doesn't matter. It's still messed up. Jmol reads EM maps just fine as far
as I know.
You sure it's OK?
> - Is JMol able to set absolute cutoffs (as normally required for
> EM maps), rather than using relative sigma values?
>
sure
isosurface cutoff x.x ....
> - What is the default value of cutoff? The third object does
> display 1akeA_10A.mrc, so I’m not quite sure what you mean by saying that
> Jmol is failing to read the file
>
I mean it read the header, indicating it was made by Chimera on Sept 7,
2009. But all the numbers for the data values are just a lot of garbage.
The right amount of garbage, but still just random numbers. Obviously
that's not true, but I tried reading them little-endian and big-endian, and
neither worked. So it's something other than that.
Does Chimera open that? Does any other EM visualizer open it?
Bob
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