I would like to try Angel's suggestion (below) but I have not discovered 
the syntax.

select x < 5.0 # this works

I don't think caret (^) is a Jmol power operator.
print 5.0^2 # syntax error
print 5.0 ** 2 # prints 25.0

but

select (x**2) < 25.0 # syntax error
select ((x**2) < 25.0) # syntax error

(Tested with Jmol 14.3.12_2015.02.10)

help will be appreciated.
thanks, Eric
On 2/17/15 3:59 AM, Angel Herráez wrote:
> Dear Eric
>
> Have you tried isosurface cavity ?
>
> Another possibility could be to generate surface just for those atoms
> that have theri XY coordinates below some threshold, say X^2 + Y^2 <
> 18^2 ?
>
>
>
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