Written before the I am not seeing this problem. I tried 14.2 and 14.3 with
a file that for which I changed
_atom_site.auth_asym_id (standard chain designation)
or
_atom_site.label_asym_id (used with FILTER "noAuthorChains")
with numbers like "3480" and "3489" and found no problems.
load t.cif
select :3489
select :3480
both selected the right number of atoms.
But now I see it has something to do with your particular file creation. If
you can direct me to a way to reproduce that, it would be good. But I don't
see how the reader would ever distinguish between those. An input stream is
an input stream. I wonder what this is?
Jmol does not read MMCIF _struct_conn records.
One could argue that we should, of course....
The 20-bond max is only for autobonding, but as you see, for mmCIF files
there is no way currently to specify connectivity.
Bob
On Mon, Apr 20, 2015 at 8:44 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> how unusual! I will look into it. Definitely a bug. I can't imagine why it
> is doing that....
>
> On Mon, Apr 20, 2015 at 8:42 AM, Rolf Huehne <rhue...@fli-leibniz.de>
> wrote:
>
>> Hi all,
>>
>> the mmCIF format generally allows multicharacter chain ids. This should
>> also include numeric characters.
>> But Jmol 14.3.13_2015.04.17 seems to refuse to load multicharacter chain
>> ids if they consist only of numerical characters.
>>
>> I tried to load an mmCIF file with several thousand chains numbered
>> sequentially. But only chain id 1 to 9 were accepted. All other chain
>> ids (_atom_site.auth_asym_id) were refused and the id left empty.
>>
>> ---- mmCIF columns -------
>> loop_
>> _atom_site.group_PDB
>> _atom_site.id
>> _atom_site.type_symbol
>> _atom_site.label_alt_id
>> _atom_site.pdbx_PDB_ins_code
>> _atom_site.Cartn_x
>> _atom_site.Cartn_y
>> _atom_site.Cartn_z
>> _atom_site.auth_seq_id
>> _atom_site.auth_comp_id
>> _atom_site.auth_asym_id
>> _atom_site.auth_atom_id
>> --------------------------
>>
>> Q: Is this intended or a bug?
>>
>> Regards,
>> Rolf
>>
>> --
>>
>> Rolf Huehne
>> Postdoc
>>
>> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
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>> 07745 Jena, Germany
>>
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>>
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>>
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>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Department of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Develop your own process in accordance with the BPMN 2 standard
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