On 04/20/2015 10:29 PM, Rolf Huehne wrote: > Am 20.04.15 um 20:25 schrieb Robert Hanson: >> But now I see it has something to do with your particular file creation. >> If you can direct me to a way to reproduce that, it would be good. But I >> don't see how the reader would ever distinguish between those. An input >> stream is an input stream. I wonder what this is? >> > I would expect that you should be able to reproduce it by first loading > your modified file into a variable and then loading it as a model: > > x=load("t.cif"); > load "@x"; > y={all}.chain.all.count(); > show y; > I could reproduce it also by replacing chain "A" with "123" in the mmCIF file for PDB entry 1DEH downloaded from the RCSB:
---- Direct Loading --------------------- load "1DEH-number_chain.cif"; x={all}.chain.all.count(); show x; x = [ [ "123",3020 ],[ "B",2961 ] ] -----Indirect Loading from Variable ----- y=load("/home/waldorf/rhuehne/incoming/1DEH-number_chain.cif"); load "@y"; x={all}.chain.all.count(); show x; x = [ [ "",3020 ],[ "B",2961 ] ] ----------------------------------------- Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT Develop your own process in accordance with the BPMN 2 standard Learn Process modeling best practices with Bonita BPM through live exercises http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users