Thank you.

This new version fixed the "Errors on missing Isosurface file": 
electrostatics2, 3BSN_3BSO, hupa_LC, HupA_2 and HupA_3

The rest stays:

The error of PyMOL reader not reading "H69" as "helix" 
(RGS-Ga_8pdb_structures_aligned_S90_20.5.15.pse) persists. The generated JPNGJ 
contains two frames, the first one appears black. This is not reported as a 
conversion time error and can be browsed at 
http://noys3.weizmann.ac.il/a2jb/browse?dsp=MUL

Java crash error: WD_1rpusessionforpymoltests

Errors related to CGO: CGOtext, bbPlane and 3cmq_design_results


On Aug 19, 2015, at 5:12 PM, Robert Hanson 
<hans...@stolaf.edu<mailto:hans...@stolaf.edu>> wrote:

I do not understand why sometimes the  build Jmol.jar does not match what I 
have when debugging. But that was the culprit with Rolf's problem.

http://sourceforge.net/projects/jmol/files/Jmol-beta/Jmol%2014.3/Jmol%2014.3.16/Jmol-14.3.16_2015.08.19-binary.zip/download

Jmol.___JmolVersion="14.3.16_2015.08.19"

bug fix: PyMOL reader does not load surface from PNGJ file
bug fix: PDB reader can skip assignments of secondary structure after first 
structure loaded during session
bug fix: bad build of Jmol.jar
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