Hi Robert, Thanks. Jmol can take scripts or commands but this is not what I want.
It would be very helpful if you can set up another flag to let Jmol take a structure from a pipe like ' - ' in linux systems cat foo.pdb | jmol -FLAG - Thank you very much. Dwey >Just wrap your system input with >load DATA "mydata" >.... >END "mydata" >I think that can be done using pipes, right? If not, I could set up a flag for that. On Wed, Sep 30, 2015 at 3:05 PM, MPI <mpi...@gmail.com> wrote: > Hi Robert and Angel, > > Thansk for the hints. > > This is NOT what I am looking for. > > I want to pipe a structure input ( such as a pdb file, NOT script ) to > Jmol. > > Jmol -I allows piping of "script" input from System.Input. > > But I am looking for piping of a structure input > > something like > > cat foo.pdb | jmol - > > > Thanks, > Dwey > > > > > > > > > -I,--input allow piping of input from System.Input > > > >see > > >java -jar Jmol.jar -h > > > On Wed, Sep 30, 2015 at 1:07 PM, Angel Herr?ez <angel.herraez@...> wrote: > > > Hi Dwey > > > > I have no experience with bash, but there used to be several batch files > > to start Jmol from command lines, maybe one of them gives you a hint. > > > > The files were included in the Jmol distribution package, before JSmol. > > So you can either download an old version or go to the source, i.e. > > https://sourceforge.net/p/jmol/code/HEAD/tree/trunk/Jmol/ > > > > "jmol" pr "jmol.sh" might be what you need? > > > > > > > > > > > > > ------------------------------------------------------------------------------ > > > > _______________________________________________ > > Jmol-users mailing list > > Jmol-users@... > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Department of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -------------- next part -------------- An HTML attachment was scrubbed... ------------------------------ ------------------------------------------------------------------------------ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
