I found it. *> $(jmolApplet0._applet.viewer.jmolpopup.popupMenu.container[0]).menu().menu('refresh').show()*
I don't know exactly what it going on there with the two versions of jQuery, but if you issue this: *jmolApplet0._applet.viewer.jmolpopup.popupMenu.container = $(jmolApplet0._applet.viewer.jmolpopup.popupMenu.container[0])* The menu will then work. This basically rewraps the actual menu DOM object (.....[0]) in a wrapper for the jQuery 1.6 object, which apparently is where the menu widget was added. OK, I know. Eric, you have somehow loaded a second version of jQuery after JSmol's version. JSmolMenu uses the jQuery object directly. (This is a mistake on my part.) It should be using JSmol's version of jQuery but instead is using yours. So the menu widget was not implemented for JSmol. I can actually fix that.... Bob
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