Dear Eric
I assume by "average" you mean the same as the midpoint beween both
points.
You can do it with
x = {gly6:a}.xyz
y = {asp13:a}.xyz
print {x,y}.xyz
print {(gly6:a,asp13:a)}.xyz
and it turns out that, funnily enough, Jmol is clever once more:
print (x+y)/2
:)
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