Hi Again Jennifer,
I spent some time looking at your code. You have a lot going on with JQuery,
JQuery UI widgets, and Bootstrap. I think I see other possible conflicts in
addition to the possible unquote attribute issue. You are loading your own
version of JQuery (along with the UI Widgets). You are, however, using
JSmol.min.js. If you’re going to load your own JQuery, you may need to use
JSmol.min.nojq.js - not JSmol.min.js. Since I load JQuery and Bootstrap, I use
JSmol.min.nojq.js.
The possible nojq issue aside for a minute, Bob or Angel may need to jump in on
this next point, but I THINK there is redundancy in these lines:
<script type="text/javascript" src="jquery/jquery.js"></script>
<script type="text/javascript" src="js/JSmoljQueryExt.js"></script>
<script type="text/javascript" src="js/JSmolCore.js"></script>
<script type="text/javascript" src="js/JSmolApplet.js"></script>
<script type="text/javascript" src="js/JSmolApi.js"></script>
<script type="text/javascript" src="js/JSmolControls.js"></script>
<script type="text/javascript" src="js/j2sjmol.js"></script>
<script type="text/javascript" src="js/JSmol.js"></script>
<script type="text/javascript" src="js/JSmolMenu.js"></script>
<script type="text/javascript" src="js/JSmolJSV.js"></script>
<script type="text/javascript" src="JSmol.min.js"></script>
Unless there is something funky going on in the page that I don’t understand,
JSmol.min.js OR JSmol.min.nojq.js is the only JSmol file that you need to call
directly.
The docs page that Eric references is important, but I think your basic problem
is installation. In solving the problem, this page may be equally important:
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object
Worth a Try Suggestion:
Since you are calling the JQuery UI files along with a number of Bootstrap
files, try:
<script type="text/javascript" src="jquery/jquery.js"></script>
<script type="text/javascript" src="JSmol.min.nojq.js"></script>
in place of the <script> lines above - i.e. just use the first and last
<script> lines with the JSmol.min.js changed to JSmol.min.nojq.js
Just to cover the base, I’d also quote that id attribute (previous email). It
can’t hurt.
Otis
--
Otis Rothenberger
o...@chemagic.org
http://chemagic.org
> On Jun 9, 2016, at 5:30 PM, Otis Rothenberger <osrot...@icloud.com> wrote:
>
> Jennifer,
>
> Although you do not have to quote attributes in HTML5, there are reports of
> issues when quotes are not used. Note your JSmol id below:
>
> <div id=jsvdiv
> style='position:relative;left:10px;width:800px;height:350px'></div>
>
> Before you start an exhaustive problem search, why don’t you just try quoting
> that id to make sure that your not experiencing an issue with this unquoted
> id?
>
> I’ll keep looking at your page code, but it looks to me like JSmol is
> loading, but id=jsvdiv is not getting its HTML.
>
> Otis
>
>
> --
> Otis Rothenberger
> o...@chemagic.org <mailto:o...@chemagic.org>
> http://chemagic.org
>
>> On Jun 9, 2016, at 3:30 PM, Jennifer L. Muzyka <jennifer.muz...@centre.edu
>> <mailto:jennifer.muz...@centre.edu>> wrote:
>>
>> We recently got a new server to host the SpectralZoo
>> (http://chemserv.centre.edu/muzyka/spectralzoo
>> <http://chemserv.centre.edu/muzyka/spectralzoo>), with new versions of PHP
>> and MySQL. Some of my SpectralZoo scripts broke, so I thought it might be
>> time to upgrade the Jmol (actually JSmol) that I’m using on the site. I see
>> even more errors, and I’m stumped about how to solve them. It looks like I
>> was previously using a version of Jmol from 11/2013. Can someone point me
>> to something to read to help me sort out the changes so that I can manage
>> the troubleshooting? (Clearly I have been away from programming for too
>> long…..) I would appreciate any advice you can offer or articles you can
>> point me towards. Thanks.
>> Jennifer
>>
>>
>>
>>
>>
>>
>>
>>
>> Jennifer Muzyka
>> H.W. Stodghill Jr. and Adele H. Stodghill Professor of Chemistry
>> Centre College
>> 600 West Walnut Street
>> Danville, KY 40422
>>
>> jennifer.muz...@centre.edu <mailto:jennifer.muz...@centre.edu>
>> http://web.centre.edu/muzyka <http://web.centre.edu/muzyka>
>> http://organicers.org <http://organicers.org/>
>>
>> 859-238-5413
>> fax 859-236-7925
>>
>>
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
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>> planning reports.
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> ------------------------------------------------------------------------------
> What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
> patterns at an interface-level. Reveals which users, apps, and protocols are
> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
> J-Flow, sFlow and other flows. Make informed decisions using capacity
> planning reports.
> https://ad.doubleclick.net/ddm/clk/305295220;132659582;e_______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
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------------------------------------------------------------------------------
What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are
consuming the most bandwidth. Provides multi-vendor support for NetFlow,
J-Flow, sFlow and other flows. Make informed decisions using capacity
planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e
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