Hello After a few weeks' online exam marking, I was beginning to feel like a zombie.
So I was interested to read about rapamycin, and the flat files issues. I loaded a flat-looking mol file obtained from inchi data into the Jmol app (v12.2) and then entered model kit and minimised. The result looks quite good. I have put it onto a web page as an exercise: http://www.biotopics.co.uk/jsmol/rapamycin.html How does it look to you? Richard Steane -----Original Message----- From: Philip Bays Sent: Tuesday, July 19, 2016 5:56 PM To: Jmol Jmol Subject: Re: [Jmol-users] Rapamycin Yea. I had just found that. > On Jul 19, 2016, at 12:38 PM, Angel Herráez <angel.herr...@uah.es> wrote: > > Hi Phil > > Going to PubChem, Compound Summary for CID 5284616 > has a "download" menu that offers no 3D structure but says "Protein-bound > 3D structures" -- their format are not helpful, but you can search in PDB > for > rapamycin and will find this ligand as RAP > > Hence, Jmol console > load ==RAP > and you have it! > > Of course, you can browse the different proteins to check the actual > "real" > 3D structure they bind > > · > Dr. Angel Herráez > Biochemistry and Molecular Biology, > Dept. of Systems Biology, University of Alcalá > E-28871 Alcalá de Henares (Madrid), Spain > > > ------------------------------------------------------------------------------ > What NetFlow Analyzer can do for you? Monitors network bandwidth and > traffic > patterns at an interface-level. Reveals which users, apps, and protocols > are > consuming the most bandwidth. Provides multi-vendor support for NetFlow, > J-Flow, sFlow and other flows. Make informed decisions using capacity > planning > reports.http://sdm.link/zohodev2dev > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users Philip Bays Emeritus Professor of Chemistry Saint Mary's College Notre Dame, IN 46556 pb...@saintmarys.edu ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports.http://sdm.link/zohodev2dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports.http://sdm.link/zohodev2dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
