I volunteer to push releases to maven central. My OSS username is sbliven.
To authorize someone, I believe that it is sufficient to add a comment to
your OSS project ticket (https://issues.sonatype.org/browse/OSSRH-3633)
requesting access for the username.
-Spencer
On Tue, Aug 23, 2016 at 10:55 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> not aware of any volunteers.
>
> On Tue, Aug 23, 2016 at 10:40 AM, Spencer Bliven <spencer.bli...@gmail.com
> > wrote:
>
>> I just wanted to bump this thread. Any chance of getting a new maven
>> maintainer added soon?
>>
>> Cheers,
>> Spencer
>>
>> On Fri, Aug 12, 2016 at 10:19 AM, Spencer Bliven <
>> spencer.bli...@gmail.com> wrote:
>>
>>> So I guess the next step that needs to happen is for Nico to request
>>> that Mark get added to the OSS ticket. I haven't been an active Jmol
>>> contributor, but I'd be happy to help with maintaining the maven package if
>>> you want to add me too (OSS user sbliven).
>>>
>>> -Spencer
>>>
>>> On Thu, Aug 11, 2016 at 11:29 PM, Robert Hanson <hans...@stolaf.edu>
>>> wrote:
>>>
>>>> all checked in.
>>>>
>>>> On Thu, Aug 11, 2016 at 3:09 AM, Spencer Bliven <
>>>> spencer.bli...@gmail.com> wrote:
>>>>
>>>>> Awesome. BioJava has good mmtf support, so if we can get the new Jmol
>>>>> release into maven then MMTF might be a good exchange format for passing
>>>>> structures to Jmol. We're currently stuck with using PDB and are hurting
>>>>> from the limitations (e.g. on chain identifiers & number of atoms).
>>>>>
>>>>> -Spencer
>>>>>
>>>>> On Wed, Aug 10, 2016 at 6:41 PM, Robert Hanson <hans...@stolaf.edu>
>>>>> wrote:
>>>>>
>>>>>> Thanks, Spencer. I am in the process of releasing an important update
>>>>>> for BioJava, as a matter of fact -- PyMOL 1.8 dump_binary PSE files and
>>>>>> the
>>>>>> new MMTF format from RCSB (which is FANTASTIC by the way...)
>>>>>>
>>>>>> Bob
>>>>>>
>>>>>> On Wed, Aug 10, 2016 at 9:25 AM, Spencer Bliven <
>>>>>> spencer.bli...@gmail.com> wrote:
>>>>>>
>>>>>>> Hey,
>>>>>>>
>>>>>>> I also took a crack at getting the dist-release command to complete,
>>>>>>> since it would be extremely nice to get BioJava using a more recent
>>>>>>> version
>>>>>>> of Jmol. Using the latest trunk I got all steps to complete by modifying
>>>>>>> tools/jmol-sonatype.xml as you suggest to refer to "${Jmol
>>>>>>> .properties.Jmol.___JmolVersion}" in line 30. This creates the
>>>>>>> build/dist-maven directory as desired.
>>>>>>>
>>>>>>> Right now only Tomas (plusik) and Nico (nicov) appear to be
>>>>>>> authorized to upload to maven central. It would be great if some
>>>>>>> additional
>>>>>>> people (e.g. Mark, Bob, perhaps even myself if desired) could get added
>>>>>>> to
>>>>>>> this. Authorization is granted by adding a user to your OSS project
>>>>>>> ticket (https://issues.sonatype.org/browse/OSSRH-3633).
>>>>>>>
>>>>>>> Any work towards a maven release is much appreciated. Let me know if
>>>>>>> I can do anything to help with this.
>>>>>>>
>>>>>>> -Spencer
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Sat, Jul 30, 2016 at 4:39 AM, Robert Hanson <hans...@stolaf.edu>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> I'm not sure how ${Jmol.properties.___JmolVersion} would be the
>>>>>>>> version number. In Build.xml it is:
>>>>>>>>
>>>>>>>> <property name="version"
>>>>>>>> value="${Jmol.properties.Jmol.___JmolVersion}"
>>>>>>>> />
>>>>>>>> <propertyregex property="version"
>>>>>>>> override = "true"
>>>>>>>> input="${version}"
>>>>>>>> regexp='"'
>>>>>>>> replace=""
>>>>>>>> global="true"
>>>>>>>> />
>>>>>>>> <echo message="version=${version}" />
>>>>>>>>
>>>>>>>>
>>>>>>>> So you are missing that regex process.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Jul 25, 2016 at 9:18 AM, Mark Williamson <m...@mjw.name>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> On 17/05/16 23:15, Robert Hanson wrote:
>>>>>>>>> > Will be checking in Jmol 14.6 release as soon as I can. But it's
>>>>>>>>> not a
>>>>>>>>> Maven release. Someone else has to do that.
>>>>>>>>>
>>>>>>>>> Sorry for the delay in replying. I have been attempting to use the
>>>>>>>>> ant
>>>>>>>>> build script, tools/jmol-sonatype.xml, to build some artifacts for
>>>>>>>>> deployment to Maven central. Here is my protocol (apologies, I am
>>>>>>>>> not
>>>>>>>>> that familiar with ant and may have made some basic errors):
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Preamble
>>>>>>>>> ---------
>>>>>>>>> 0) Start with a 64 bit install of Ubuntu 14.04.4
>>>>>>>>>
>>>>>>>>> 1) Install the following packages
>>>>>>>>> sudo apt-get install mvn libsaxon-java openjdk-7-jdk ant
>>>>>>>>>
>>>>>>>>> 2) Create ~/.jmol.build.properties file with contents
>>>>>>>>> <property name="keystore.name" value="selfSignedCertificate" />
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Main
>>>>>>>>> ----
>>>>>>>>> 1) Obtain the source code and extract
>>>>>>>>> wget
>>>>>>>>> http://heanet.dl.sourceforge.net/project/jmol/Jmol/Version%2
>>>>>>>>> 014.6/Version%2014.6.1/Jmol-14.6.1_2016.07.11-full.tar.gz
>>>>>>>>>
>>>>>>>>> tar xfvz Jmol-14.6.1_2016.07.11-full.tar.gz
>>>>>>>>> cd jmol-14.6.1_2016.07.11
>>>>>>>>>
>>>>>>>>> 2) Add a required jar to enable docs to be built
>>>>>>>>> cp /usr/share/java/saxon.jar ./jars/
>>>>>>>>>
>>>>>>>>> 3) Build jar target
>>>>>>>>> ant jar
>>>>>>>>> <input ~/.jmol.build.properties as the private property file >
>>>>>>>>>
>>>>>>>>> 4) Build dist target
>>>>>>>>> ant dist
>>>>>>>>> <input ~/.jmol.build.properties as the private property file >
>>>>>>>>>
>>>>>>>>> This fails with an error stating that “srcjsv does not exist” and
>>>>>>>>> this
>>>>>>>>> is because I do not have the source to JSpecView in the tree.
>>>>>>>>> However,
>>>>>>>>> if I should omit the line 1216 in build.xml, for the sake of
>>>>>>>>> reaching
>>>>>>>>> the next step:
>>>>>>>>>
>>>>>>>>> <!-- <fileset dir="srcjsv" />-->
>>>>>>>>>
>>>>>>>>> And proceed to this:
>>>>>>>>>
>>>>>>>>> ant -f ./tools/jmol-sonatype.xml dist-release
>>>>>>>>>
>>>>>>>>> Then, the following error is seen:
>>>>>>>>> BUILD FAILED
>>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/tools/jmol-
>>>>>>>>> sonatype.xml:91:
>>>>>>>>> Warning: Could not find file
>>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/build/dist/
>>>>>>>>> jmol-${Jmol.properties.___JmolVersion}-javadoc.jar
>>>>>>>>> to copy.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> I am guessing that this seems to be some form of mis-parsing of the
>>>>>>>>> Jmol.properties.___JmolVersion in the build/dist directory?
>>>>>>>>>
>>>>>>>>> Do you have any suggestions on how to resolve this?
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>>
>>>>>>>>> Mark
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ------------------------------------------------------------
>>>>>>>>> ------------------
>>>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth
>>>>>>>>> and traffic
>>>>>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>>>>>> protocols are
>>>>>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>>>>>> NetFlow,
>>>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using
>>>>>>>>> capacity planning
>>>>>>>>> reports.http://sdm.link/zohodev2dev
>>>>>>>>> _______________________________________________
>>>>>>>>> Jmol-users mailing list
>>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Robert M. Hanson
>>>>>>>> Larson-Anderson Professor of Chemistry
>>>>>>>> St. Olaf College
>>>>>>>> Northfield, MN
>>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>>>
>>>>>>>>
>>>>>>>> If nature does not answer first what we want,
>>>>>>>> it is better to take what answer we get.
>>>>>>>>
>>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>>
>>>>>>>>
>>>>>>>> ------------------------------------------------------------
>>>>>>>> ------------------
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Jmol-users mailing list
>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------
>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>>>>> traffic
>>>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>>>> protocols are
>>>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>>>> NetFlow,
>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>>>>> planning reports. http://sdm.link/zohodev2dev
>>>>>>> _______________________________________________
>>>>>>> Jmol-users mailing list
>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Robert M. Hanson
>>>>>> Larson-Anderson Professor of Chemistry
>>>>>> St. Olaf College
>>>>>> Northfield, MN
>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>
>>>>>>
>>>>>> If nature does not answer first what we want,
>>>>>> it is better to take what answer we get.
>>>>>>
>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------
>>>>>> ------------------
>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>>>> traffic
>>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>>> protocols are
>>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>>> NetFlow,
>>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>>>> planning reports. http://sdm.link/zohodev2dev
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> Jmol-users@lists.sourceforge.net
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>> ------------------------------------------------------------
>>>>> ------------------
>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>>> traffic
>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>> protocols are
>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>> NetFlow,
>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>>> planning reports. http://sdm.link/zohodev2dev
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> Jmol-users@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>>
>>>> ------------------------------------------------------------
>>>> ------------------
>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>> traffic
>>>> patterns at an interface-level. Reveals which users, apps, and
>>>> protocols are
>>>> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>> planning reports. http://sdm.link/zohodev2dev
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> Jmol-users@lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>
>>
>> ------------------------------------------------------------
>> ------------------
>>
>> _______________________________________________
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> ------------------------------------------------------------
> ------------------
>
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
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