Thanks, Spencer. I am in the process of releasing an important update for
BioJava, as a matter of fact -- PyMOL 1.8 dump_binary PSE files and the new
MMTF format from RCSB (which is FANTASTIC by the way...)
Bob
On Wed, Aug 10, 2016 at 9:25 AM, Spencer Bliven <spencer.bli...@gmail.com>
wrote:
> Hey,
>
> I also took a crack at getting the dist-release command to complete, since
> it would be extremely nice to get BioJava using a more recent version of
> Jmol. Using the latest trunk I got all steps to complete by modifying
> tools/jmol-sonatype.xml as you suggest to refer to "${Jmol.properties.Jmol
> .___JmolVersion}" in line 30. This creates the build/dist-maven directory
> as desired.
>
> Right now only Tomas (plusik) and Nico (nicov) appear to be authorized to
> upload to maven central. It would be great if some additional people (e.g.
> Mark, Bob, perhaps even myself if desired) could get added to this.
> Authorization
> is granted by adding a user to your OSS project ticket (
> https://issues.sonatype.org/browse/OSSRH-3633).
>
> Any work towards a maven release is much appreciated. Let me know if I can
> do anything to help with this.
>
> -Spencer
>
>
>
> On Sat, Jul 30, 2016 at 4:39 AM, Robert Hanson <hans...@stolaf.edu> wrote:
>
>> I'm not sure how ${Jmol.properties.___JmolVersion} would be the version
>> number. In Build.xml it is:
>>
>> <property name="version" value="${Jmol.properties.Jmol.___JmolVersion}"
>> />
>> <propertyregex property="version"
>> override = "true"
>> input="${version}"
>> regexp='"'
>> replace=""
>> global="true"
>> />
>> <echo message="version=${version}" />
>>
>>
>> So you are missing that regex process.
>>
>>
>>
>> On Mon, Jul 25, 2016 at 9:18 AM, Mark Williamson <m...@mjw.name> wrote:
>>
>>> On 17/05/16 23:15, Robert Hanson wrote:
>>> > Will be checking in Jmol 14.6 release as soon as I can. But it's not a
>>> Maven release. Someone else has to do that.
>>>
>>> Sorry for the delay in replying. I have been attempting to use the ant
>>> build script, tools/jmol-sonatype.xml, to build some artifacts for
>>> deployment to Maven central. Here is my protocol (apologies, I am not
>>> that familiar with ant and may have made some basic errors):
>>>
>>>
>>> Preamble
>>> ---------
>>> 0) Start with a 64 bit install of Ubuntu 14.04.4
>>>
>>> 1) Install the following packages
>>> sudo apt-get install mvn libsaxon-java openjdk-7-jdk ant
>>>
>>> 2) Create ~/.jmol.build.properties file with contents
>>> <property name="keystore.name" value="selfSignedCertificate" />
>>>
>>>
>>> Main
>>> ----
>>> 1) Obtain the source code and extract
>>> wget
>>> http://heanet.dl.sourceforge.net/project/jmol/Jmol/Version%2
>>> 014.6/Version%2014.6.1/Jmol-14.6.1_2016.07.11-full.tar.gz
>>>
>>> tar xfvz Jmol-14.6.1_2016.07.11-full.tar.gz
>>> cd jmol-14.6.1_2016.07.11
>>>
>>> 2) Add a required jar to enable docs to be built
>>> cp /usr/share/java/saxon.jar ./jars/
>>>
>>> 3) Build jar target
>>> ant jar
>>> <input ~/.jmol.build.properties as the private property file >
>>>
>>> 4) Build dist target
>>> ant dist
>>> <input ~/.jmol.build.properties as the private property file >
>>>
>>> This fails with an error stating that “srcjsv does not exist” and this
>>> is because I do not have the source to JSpecView in the tree. However,
>>> if I should omit the line 1216 in build.xml, for the sake of reaching
>>> the next step:
>>>
>>> <!-- <fileset dir="srcjsv" />-->
>>>
>>> And proceed to this:
>>>
>>> ant -f ./tools/jmol-sonatype.xml dist-release
>>>
>>> Then, the following error is seen:
>>> BUILD FAILED
>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/tools/jmol-
>>> sonatype.xml:91:
>>> Warning: Could not find file
>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/build/dist/
>>> jmol-${Jmol.properties.___JmolVersion}-javadoc.jar
>>> to copy.
>>>
>>>
>>> I am guessing that this seems to be some form of mis-parsing of the
>>> Jmol.properties.___JmolVersion in the build/dist directory?
>>>
>>> Do you have any suggestions on how to resolve this?
>>>
>>> Thanks,
>>>
>>> Mark
>>>
>>>
>>>
>>> ------------------------------------------------------------
>>> ------------------
>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>> traffic
>>> patterns at an interface-level. Reveals which users, apps, and protocols
>>> are
>>> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>> planning
>>> reports.http://sdm.link/zohodev2dev
>>> _______________________________________________
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> ------------------------------------------------------------
>> ------------------
>>
>> _______________________________________________
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
> ------------------------------------------------------------
> ------------------
> What NetFlow Analyzer can do for you? Monitors network bandwidth and
> traffic
> patterns at an interface-level. Reveals which users, apps, and protocols
> are
> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
> J-Flow, sFlow and other flows. Make informed decisions using capacity
> planning reports. http://sdm.link/zohodev2dev
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are
consuming the most bandwidth. Provides multi-vendor support for NetFlow,
J-Flow, sFlow and other flows. Make informed decisions using capacity
planning reports. http://sdm.link/zohodev2dev
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