Hi guys,
I installed hdf5 manually on a linux server which I have no root privilege.
Pkg.add("HDF5") is fine but `using HDF5` will give me the following errors:
julia> Pkg.add("HDF5")
INFO: Installing BinDeps v0.3.6
INFO: Installing HDF5 v0.4.6
INFO: Installing SHA v0.0.3
INFO: Installing URIParser v0.0.3
INFO: Building HDF5
INFO: Package database updated
julia> using HDF5
HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
#000: H5P.c line 299 in H5Pcreate(): not a property list class
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
#000: H5Pstrcpl.c line 159 in H5Pset_char_encoding(): can't find object
for ID
major: Object atom
minor: Unable to find atom information (already closed?)
#001: H5Pint.c line 3381 in H5P_object_verify(): property list is not a
member of the class
major: Property lists
minor: Unable to register new atom
#002: H5Pint.c line 3331 in H5P_isa_class(): not a property list
major: Invalid arguments to routine
minor: Inappropriate type
ERROR: Error setting char encoding
in h5p_set_char_encoding at /home/pan/.julia/v0.3/HDF5/src/plain.jl:1848
in include at ./boot.jl:245
in include_from_node1 at ./loading.jl:128
in include at ./boot.jl:245
in include_from_node1 at ./loading.jl:128
in reload_path at loading.jl:152
in _require at loading.jl:67
in require at loading.jl:51
while loading /home/pan/.julia/v0.3/HDF5/src/plain.jl, in expression
starting on line 2102
while loading /home/pan/.julia/v0.3/HDF5/src/HDF5.jl, in expression
starting on line 1
julia> dlopen("libhdf5")
Ptr{Void} @0x00000000057e89b0
I also tried to use the binary hdf5 files, but the error persists. The
system information:
$ cat /etc/redhat-release
CentOS release 6.6 (Final)
$ gcc --version
gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15)
$which gcc
~/gcc-4.8.2/bin/gcc
$ julia --version
julia version 0.3.2
