Wow, 1.8.13 works! I have been fighting with it for a whole night.
Thanks!
On Wednesday, November 19, 2014 12:15:16 PM UTC-6, Tim Holy wrote:
>
> For the binary, which library version are you using? Can you test
> something
> different from 1.8.14? (I don't have any particular reason to suspect
> 1.8.14 is
> bad, I am just wondering...)
>
> --Tim
>
> On Wednesday, November 19, 2014 10:08:41 AM Lanfeng Pan wrote:
> > Hi guys,
> >
> > I installed hdf5 manually on a linux server which I have no root
> privilege.
> > Pkg.add("HDF5") is fine but `using HDF5` will give me the following
> errors:
> >
> > julia> Pkg.add("HDF5")
> > INFO: Installing BinDeps v0.3.6
> > INFO: Installing HDF5 v0.4.6
> > INFO: Installing SHA v0.0.3
> > INFO: Installing URIParser v0.0.3
> > INFO: Building HDF5
> > INFO: Package database updated
> >
> > julia> using HDF5
> > HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
> > #000: H5P.c line 299 in H5Pcreate(): not a property list class
> > major: Invalid arguments to routine
> > minor: Inappropriate type
> > HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
> > #000: H5Pstrcpl.c line 159 in H5Pset_char_encoding(): can't find
> object
> > for ID
> > major: Object atom
> > minor: Unable to find atom information (already closed?)
> > #001: H5Pint.c line 3381 in H5P_object_verify(): property list is not
> a
> > member of the class
> > major: Property lists
> > minor: Unable to register new atom
> > #002: H5Pint.c line 3331 in H5P_isa_class(): not a property list
> > major: Invalid arguments to routine
> > minor: Inappropriate type
> > ERROR: Error setting char encoding
> > in h5p_set_char_encoding at
> /home/pan/.julia/v0.3/HDF5/src/plain.jl:1848
> > in include at ./boot.jl:245
> > in include_from_node1 at ./loading.jl:128
> > in include at ./boot.jl:245
> > in include_from_node1 at ./loading.jl:128
> > in reload_path at loading.jl:152
> > in _require at loading.jl:67
> > in require at loading.jl:51
> > while loading /home/pan/.julia/v0.3/HDF5/src/plain.jl, in expression
> > starting on line 2102
> > while loading /home/pan/.julia/v0.3/HDF5/src/HDF5.jl, in expression
> > starting on line 1
> >
> > julia> dlopen("libhdf5")
> > Ptr{Void} @0x00000000057e89b0
> >
> >
> >
> >
> > I also tried to use the binary hdf5 files, but the error persists. The
> > system information:
> >
> > $ cat /etc/redhat-release
> > CentOS release 6.6 (Final)
> >
> > $ gcc --version
> > gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15)
> >
> > $which gcc
> > ~/gcc-4.8.2/bin/gcc
> >
> > $ julia --version
> > julia version 0.3.2
>
>
