They don't:
$ make test
JULIA test/all
From worker 2: * linalg1
From worker 5: * linalg4
From worker 4: * linalg3
From worker 6: * linalg/cholmod
From worker 7: * linalg/umfpack
From worker 9: * keywordargs
From worker 3: * linalg2
From worker 8: * core
From worker 9: * numbers
From worker 6: * strings
From worker 8: * collections
From worker 7: * hashing
From worker 6: * remote
From worker 6: * iobuffer
From worker 6: * arrayops
From worker 7: * reduce
From worker 7: * reducedim
From worker 8: * simdloop
From worker 8: * blas
From worker 8: * fft
From worker 7: * dsp
From worker 8: * sparse
From worker 7: * bitarray
From worker 9: * random
From worker 9: * math
From worker 4: * functional
From worker 4: * bigint
From worker 4: * sorting
From worker 6: * statistics
exception on 5: ERROR: assertion failed: |func(D) - func(DM)| <=
3.4332275e-5
func(D) = 1.048798f0 - 1.5707964f0im
func(DM) = 1.0487979650497437 - 0.5797938426309308im
difference = 0.9910025278753558 > 3.4332275e-5
in error at error.jl:22
in test_approx_eq at test.jl:109
in anonymous at no file:295
in runtests at /users/psanan/julia-release-0.3/test/testdefs.jl:5
in anonymous at multi.jl:855
in run_work_thunk at multi.jl:621
in anonymous at task.jl:855
while loading linalg4.jl, in expression starting on line 263
^C
WARNING: Forcibly interrupting busy workers
exception on 2: WARNING: Unable to terminate all workers
make: *** [test] Interrupt
On 18/02/15 06:00 PM, Viral Shah wrote:
Do all the tests pass?
On Wed, Feb 18, 2015 at 10:29 PM, Patrick Sanan
<[email protected] <mailto:[email protected]>> wrote:
As an update, I was able to build and run the repl with
release-0.3 by making the following change (simply adding the
--disable-dtrace flag when configuring libuv):
diff --git a/deps/Makefile b/deps/Makefile
index c702eaa..9aa622e 100644
--- a/deps/Makefile
+++ b/deps/Makefile
@@ -467,7 +467,7 @@ libuv/config.status:
$(JULIAHOME)/.git/modules/deps/libuv/HEAD
endif
libuv/config.status: libuv/configure
cd libuv && \
- ./configure --with-pic $(CONFIGURE_COMMON) $(UV_OPTS)
+ ./configure --with-pic --disable-dtrace
$(CONFIGURE_COMMON) $(UV_OPTS)
touch -c $@
$(UV_SRC_TARGET): libuv/config.status
touch -c libuv/aclocal.m4
On Wednesday, February 18, 2015 at 10:14:08 AM UTC+1, Patrick
Sanan wrote:
This problem is still persisting for us with the release-0.3
branch (which we would like to use since our application code
depends on it).
From grepping and nm-ing around, it seems like (at least to
the point where my build fails) the offending symbols
mentioned above are (only) declared in the
automatically-generated header
$JULIA_DIR/deps/libuv/include/uv-dtrace.h .
In our successful build of the master branch, the symbols are
defined in $JULIA_DIR/deps/libuv/uv-dtrace.o (which does not
appear in the release-0.3 build).
I don't know anything about dtrace, but it does seem that it
was removed from libuv recently :
https://github.com/joyent/libuv/commit/cb5140023b109aa9bb6b97d1bebc9f251b8195ac
. I don't notice it being used in julia anywhere besides with
libuv (simply based on grepping the julia directory).
Any ideas on a good way to proceed? Perhaps there's a simple
way to disable dtrace in the libuv build?
On Thursday, February 5, 2015 at 5:19:32 AM UTC+1, Viral Shah
wrote:
`make -j n` used to work correctly at one point, but bugs
in the makefile dependencies keep creeping in. Usually, I
just run one final `make` to make sure that everything got
built correctly.
-viral
On Wednesday, February 4, 2015 at 7:12:14 PM UTC+5:30,
Patrick Sanan wrote:
I was able to successfully build julia from source and
run the repl from a (login) node on the machine. The
build procedure was almost identical to previous
attempts (following the instructions provided to use
the intel compilers and MKL, without using any local
versions of dependencies), but from a different
machine and operating system (Ubuntu 14.04.1 LTS
instead of OS X 10.9.5). The only noticeable
difference is that the intel compilers will fail if
locale information is not available, which it's not by
default when logging in from OS X (see
https://software.intel.com/en-us/articles/cdiag912),
but perhaps there are others.
The only minor problem was that running make -j 12
produced an error about libopenlibm.so.1 not
existing. Re-running make -j 12 led to a successful
build so my assumption is that there is an unspecified
dependency involving this library.
On Tuesday, February 3, 2015 at 9:59:12 PM UTC+1,
Patrick Sanan wrote:
Someone at the computer center did manage to build
successfully julia today using intel compilers and
MKL, using a procedure very similar to mine, so I
am hopeful that we will be able to isolate any
differences tomorrow.
On 03/02/15 09:49 PM, Tony Kelman wrote:
I can't find any evidence of an issue ever being
reported on this, no mention
of uv_tick__stop_semaphore on Julia's issue tracker.
I'd have to dig into libuv's source code and see
where these symbols normally come from, and
determine what is unusual about these Cray systems.
On Tuesday, February 3, 2015 at 4:18:46 AM UTC-8,
Patrick Sanan wrote:
I am having a nearly-identical issue with the
release-0.3 branch (the same errors with
uv_tick__... symbols) on a Cray XC-40 system.
Has any solution or workaround been
discovered since this was posted?
On Friday, October 17, 2014 at 5:05:52 PM
UTC+2, Niklas Vanhainen wrote:
Hi
I'm having problems getting Julia to
build on a cluster that I'm using. It's a
Cray XC-30 cluster with an Ivy-Bridge
architecture, and it appears to be
running on SLES 11
Right now, I'm building this without
linking to external BLAS, FFTW, etc.
libraries (the heavy lifting matrix
operations will be done in a C function
anyways, and I had major problems getting
anywhere while linking to cray-libsci)
The problem I'm having right now is that
"flisp" will not link, because of
problems with the symbols
"uv_tick__stop_semaphore" and
"uv_tick__start_semaphore" in libuv. I've
tried using both the provided libuv as
well as downloading it separately and
compiling. I get related but different
problems in both cases.
First, in the case with the provided libuv:
Making install in SYM
CC src/jltypes.o
CC src/gf.o
CC src/support/hashing.o
CC src/support/timefuncs.o
CC src/support/ptrhash.o
CC src/support/operators.o
CC src/support/utf8.o
CC src/support/ios.o
CC src/support/htable.o
CC src/support/bitvector.o
CC src/support/int2str.o
CC src/support/libsupportinit.o
CC src/support/arraylist.o
CC src/support/strtod.o
LINK src/support/libsupport.a
CC src/flisp/flisp.o
CC src/flisp/builtins.o
CC src/flisp/string.o
CC src/flisp/equalhash.o
CC src/flisp/table.o
CC src/flisp/iostream.o
CC src/flisp/julia_extensions.o
LINK src/flisp/libflisp.a
CC src/flisp/flmain.o
LINK src/flisp/flisp
/cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0x24):
undefined reference to
`uv_tick__start_semaphore'
/cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0x70):
undefined reference to
`uv_tick__stop_semaphore'
/cfs/milner/scratch/n/niklasva/julia_build/julia/usr/lib/libuv.a(libuv_la-core.o):(.note.stapsdt+0xbc):
undefined reference to
`uv_tick__stop_semaphore'
collect2: error: ld returned 1 exit status
make[3]: *** [flisp] Error 1
make[2]: *** [flisp/libflisp.a] Error 2
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
Second, in the case of the external libuv:
Making install in SYM
CC src/jltypes.o
CC src/gf.o
CC src/support/hashing.o
CC src/support/timefuncs.o
CC src/support/ptrhash.o
CC src/support/operators.o
CC src/support/utf8.o
CC src/support/ios.o
CC src/support/htable.o
CC src/support/bitvector.o
CC src/support/int2str.o
CC src/support/libsupportinit.o
CC src/support/arraylist.o
CC src/support/strtod.o
LINK src/support/libsupport.a
CC src/flisp/flisp.o
CC src/flisp/builtins.o
CC src/flisp/string.o
CC src/flisp/equalhash.o
CC src/flisp/table.o
CC src/flisp/iostream.o
CC src/flisp/julia_extensions.o
LINK src/flisp/libflisp.a
CC src/flisp/flmain.o
LINK src/flisp/flisp
/usr/bin/ld: flisp: hidden symbol
`uv_tick__stop_semaphore' in
/cfs/scratch/n/niklasva/libuv/lib/libuv.a(uv-dtrace.o)
is referenced by DSO
/usr/bin/ld: final link failed: Bad value
collect2: error: ld returned 1 exit status
make[3]: *** [flisp] Error 1
make[2]: *** [flisp/libflisp.a] Error 2
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
In the second case, this is the contents
of my Make.user:
override LIBUV =
/cfs/scratch/n/niklasva/libuv/lib/libuv.a
override LIBUV_INC =
/cfs/scratch/n/niklasva/libuv/include/
I would be very grateful if someone could
help me fix this problem.
--
-viral
