Strange. That commit is present in the repository: see
https://github.com/timholy/HDF5.jl/commits/master
Anyone else having the same problem?
I just did this and it went off without a hitch (julia-old is my installation
of the 0.3 release):
$ mkdir /tmp/packages
$ JULIA_PKGDIR=/tmp/packages julia-old
_
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "help()" for help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.3.7-pre+1 (2015-02-17 22:12 UTC)
_/ |\__'_|_|_|\__'_| | Commit d15f183* (153 days old release-0.3)
|__/ | x86_64-linux-gnu
julia> Pkg.init()
INFO: Initializing package repository /tmp/packages/v0.3
INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
julia> Pkg.add("HDF5")
INFO: Cloning cache of BinDeps from git://github.com/JuliaLang/BinDeps.jl.git
INFO: Cloning cache of Blosc from git://github.com/stevengj/Blosc.jl.git
INFO: Cloning cache of Compat from git://github.com/JuliaLang/Compat.jl.git
INFO: Cloning cache of HDF5 from git://github.com/timholy/HDF5.jl.git
INFO: Cloning cache of SHA from git://github.com/staticfloat/SHA.jl.git
INFO: Cloning cache of URIParser from
git://github.com/JuliaWeb/URIParser.jl.git
INFO: Installing BinDeps v0.3.14
INFO: Installing Blosc v0.1.2
INFO: Installing Compat v0.4.9
INFO: Installing HDF5 v0.5.0
INFO: Installing SHA v0.0.4
INFO: Installing URIParser v0.0.5
INFO: Building Blosc
% Total % Received % Xferd Average Speed Time Time Time
Current
Dload Upload Total Spent Left Speed
100 121 0 121 0 0 553 0 --:--:-- --:--:-- --:--:-- 555
0 0 0 233k 0 0 221k 0 --:--:-- 0:00:01 --:--:-- 427k
Compiling libblosc...
CC blosc.c
CC blosclz.c
CC shuffle.c
LINK libblosc
INFO: Building HDF5
INFO: Package database updated
julia>
which went like a charm. Maybe try Pkg.update()?
--Tim
On Monday, July 20, 2015 10:36:25 PM Roger Herikstad wrote:
> Hi,
> For some reason I am unable to add HDF5. Not sure if this is related to
> the recent change splitting JLD off into its own package. This is the error
> I got
>
> ulia> Pkg.add("HDF5")
> INFO: Updating cache of HDF5...
> ERROR: Missing package versions (possible metadata misconfiguration): HDF5
> v(nothing,v"0.5.0") [883165af1cef09980a3d9b1718477579d629754c[1:10]]
>
> in wait at
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia
> /sys.dylib (repeats 2 times)
> in wait at task.jl:48
> in sync_end at
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia
> /sys.dylib in add at pkg/entry.jl:319
> in add at pkg/entry.jl:71
> in anonymous at pkg/dir.jl:28
> in cd at
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia
> /sys.dylib in __cd#229__ at
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia
> /sys.dylib in add at pkg.jl:20
>
> This is my versioninfo:
>
> julia> versioninfo()
> Julia Version 0.3.10
> Commit c8ceeef* (2015-06-24 13:54 UTC)
> Platform Info:
> System: Darwin (x86_64-apple-darwin13.4.0)
> CPU: Intel(R) Xeon(R) CPU X5472 @ 3.00GHz
> WORD_SIZE: 64
> BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Penryn)
> LAPACK: libopenblas
> LIBM: libopenlibm
> LLVM: libLLVM-3.3
>
> I appreciate any advice on what the problem might be. Thanks!
