Hm, just tried Pkg.update() on 0.4.0-dev+5955 and I got the new version of HDF5 without any problems, so there's probably something wonky going on with Pkg on my 0.3.10. Is there anything I can do to try and reset Pkg, short of nuking my whole ~/.julia/v0.3 directory and starting over?
On Tue, Jul 21, 2015 at 6:38 PM, Tim Holy <tim.h...@gmail.com> wrote: > Strange. That commit is present in the repository: see > https://github.com/timholy/HDF5.jl/commits/master > Anyone else having the same problem? > > I just did this and it went off without a hitch (julia-old is my > installation > of the 0.3 release): > $ mkdir /tmp/packages > $ JULIA_PKGDIR=/tmp/packages julia-old > _ > _ _ _(_)_ | A fresh approach to technical computing > (_) | (_) (_) | Documentation: http://docs.julialang.org > _ _ _| |_ __ _ | Type "help()" for help. > | | | | | | |/ _` | | > | | |_| | | | (_| | | Version 0.3.7-pre+1 (2015-02-17 22:12 UTC) > _/ |\__'_|_|_|\__'_| | Commit d15f183* (153 days old release-0.3) > |__/ | x86_64-linux-gnu > > julia> Pkg.init() > INFO: Initializing package repository /tmp/packages/v0.3 > INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl > > julia> Pkg.add("HDF5") > INFO: Cloning cache of BinDeps from git:// > github.com/JuliaLang/BinDeps.jl.git > INFO: Cloning cache of Blosc from git://github.com/stevengj/Blosc.jl.git > INFO: Cloning cache of Compat from git:// > github.com/JuliaLang/Compat.jl.git > INFO: Cloning cache of HDF5 from git://github.com/timholy/HDF5.jl.git > INFO: Cloning cache of SHA from git://github.com/staticfloat/SHA.jl.git > INFO: Cloning cache of URIParser from > git://github.com/JuliaWeb/URIParser.jl.git > INFO: Installing BinDeps v0.3.14 > INFO: Installing Blosc v0.1.2 > INFO: Installing Compat v0.4.9 > INFO: Installing HDF5 v0.5.0 > INFO: Installing SHA v0.0.4 > INFO: Installing URIParser v0.0.5 > INFO: Building Blosc > % Total % Received % Xferd Average Speed Time Time Time > Current > Dload Upload Total Spent Left > Speed > 100 121 0 121 0 0 553 0 --:--:-- --:--:-- --:--:-- > 555 > 0 0 0 233k 0 0 221k 0 --:--:-- 0:00:01 --:--:-- > 427k > Compiling libblosc... > CC blosc.c > CC blosclz.c > CC shuffle.c > LINK libblosc > INFO: Building HDF5 > INFO: Package database updated > > julia> > > which went like a charm. Maybe try Pkg.update()? > > --Tim > > On Monday, July 20, 2015 10:36:25 PM Roger Herikstad wrote: > > Hi, > > For some reason I am unable to add HDF5. Not sure if this is related to > > the recent change splitting JLD off into its own package. This is the > error > > I got > > > > ulia> Pkg.add("HDF5") > > INFO: Updating cache of HDF5... > > ERROR: Missing package versions (possible metadata misconfiguration): > HDF5 > > v(nothing,v"0.5.0") [883165af1cef09980a3d9b1718477579d629754c[1:10]] > > > > in wait at > > > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia > > /sys.dylib (repeats 2 times) > > in wait at task.jl:48 > > in sync_end at > > > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia > > /sys.dylib in add at pkg/entry.jl:319 > > in add at pkg/entry.jl:71 > > in anonymous at pkg/dir.jl:28 > > in cd at > > > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia > > /sys.dylib in __cd#229__ at > > > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/julia > > /sys.dylib in add at pkg.jl:20 > > > > This is my versioninfo: > > > > julia> versioninfo() > > Julia Version 0.3.10 > > Commit c8ceeef* (2015-06-24 13:54 UTC) > > Platform Info: > > System: Darwin (x86_64-apple-darwin13.4.0) > > CPU: Intel(R) Xeon(R) CPU X5472 @ 3.00GHz > > WORD_SIZE: 64 > > BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Penryn) > > LAPACK: libopenblas > > LIBM: libopenlibm > > LLVM: libLLVM-3.3 > > > > I appreciate any advice on what the problem might be. Thanks! > > -- ~ Roger
