Try removing .julia/lib (the precompile cache). I had this same issue and 
this appears to have fixed it. 

On Monday, 12 September 2016 12:06:48 UTC+1, DNF wrote:
>
> After updating to RC4 (binary download) plotting completely stopped 
> working for me.
>
> julia> plot(rand(5)) 
> [Plots.jl] Initializing backend: gr 
> INFO: Precompiling module GR. 
> WARNING: Module Compat with uuid 169833921923513 is missing from the cache
> . 
> This may mean module Compat does not support precompilation but is 
> imported by a module that does. 
> ERROR: LoadError: Declaring __precompile__(false) is not allowed in files 
> that are being precompiled. 
>  in require(::Symbol) at ./loading.jl:385 
>  in require(::Symbol) at /Applications/Julia-0.5.app/Contents/Resources/
> julia/lib/julia/sys.dylib:? 
>  in include_from_node1(::String) at ./loading.jl:488 
>  in include_from_node1(::String) at /Applications/Julia-0.5.app/Contents/
> Resources/julia/lib/julia/sys.dylib:? 
>  in macro expansion; at ./none:2 [inlined] 
>  in anonymous at ./<missing>:? 
>  in eval(::Module, ::Any) at ./boot.jl:234 
>  in eval(::Module, ::Any) at /Applications/Julia-0.5.app/Contents/
> Resources/julia/lib/julia/sys.dylib:? 
>  in process_options(::Base.JLOptions) at ./client.jl:239 
>  in _start() at ./client.jl:318 
>  in _start() at /Applications/Julia-0.5.app/Contents/Resources/julia/lib/
> julia/sys.dylib:? 
> while loading ~/.julia/GR/src/GR.jl, in expression starting on line 7 
> WARNING: Couldn't initialize gr.  (might need to install it?) 
>
> ------------------------------------------------------------------------------------------
>
>
> I have un- and reinstalled Plots.jl, GR.jl, PyPlot.jl and Compat.jl to no 
> avail.
>
>
> I would file an issue about it, but firstly, I don't know whether it 
> should go on Julia, Plots.jl or Compat.jl. And, secondly, I find it weird 
> that no-one else has experienced this pretty showstopping bug and filed an 
> issue already, so I suspect it might be problem only with my installation.
>
>
> Can anyone help me out, I'm totally stuck right now.
>

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