Yes, there is. That's just a GUI to edit ontology_catalog.xml, though, I think.
- Sean On Thu, Apr 26, 2012 at 2:28 PM, Shawn Bowers <[email protected]> wrote: > Hi, > > If I recall correctly, I thought there was also a way to "register" an > ontology via the tag editor (not sure what this is called)? I know > this was in an initial version of the tagging module. I don't have it > up and running here to check ... > > Shawn > > On Thu, Apr 26, 2012 at 2:23 PM, Sean Riddle <[email protected]> wrote: > > If I recall, the ontology_catalog.xml file you edited is copied into > place > > in the ~/.kepler directory if it is not already there. Adding your edit > to > > the copy in .kepler (or just deleting the copy in .kepler, which should > > re-copy your modified version) should get you up and running. > > > > Also, I would try using absolute paths to your ontologies first and then > > experimenting to determine with respect to what local pathnames are > > calculated (probably the main Kepler directory). > > > > - Sean > > > > On Thu, Apr 26, 2012 at 5:13 AM, <Michael.O'[email protected]> wrote: > >> > >> I wanted to add my own ontology to Kepler, so that I could semantically > >> annotate inputs and outputs in my workflows. > >> > >> I have found at least one message in the kepler-user lists that > discusses > >> this: > >> > >> > http://lists.nceas.ucsb.edu/ecoinformatics/pipermail/kepler-users/2006-January/000053.html > >> > >> Followed the suggestions by: > >> — adding my .owl file to > >> > /Applications/Kepler-2.3/Kepler.app/Contents/Resources/Java/common-2.3.0/configs/ptolemy/configs/kepler/ontologies > >> — in the same folder I added an entry to ontology_catalog.xml i.e. > >> <ontology filename="myOwl.owl" library="false"/> > >> > >> My ontology did not appear in the list of Categories in the Input tab of > >> the Semantic Type Annotation dialog. > >> > >> Next approach — my ontology might not be correctly formed as far as > Kepler > >> is concerned (it does open fine in Protege 4.2)? So I made a copy of > one of > >> the SEEK ontologies and tried that, as above, but the same lack of > result. > >> > >> Perhaps I'm putting the ontology in the wrong place (i.e. not inside the > >> folder for the Application) or I have to rebuild or compile something > to get > >> this to work. > >> > >> Any help gratefully received, > >> > >> — Mike > >> _______________________________________________ > >> Kepler-users mailing list > >> [email protected] > >> http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > > > > > > > _______________________________________________ > > Kepler-users mailing list > > [email protected] > > http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users > > >
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