I tried some other kernel parameters:

scsi_scan=sync -> didn't help
pci=nomsi,nommconf -> didn't help

For now I'm just booting the 3.13.0 kernel since I need the server up
and don't have good physical access to it.

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https://bugs.launchpad.net/bugs/1653162

Title:
  System won't boot after upgrade to 16.04 with 4.4.0 kernel

Status in linux package in Ubuntu:
  Incomplete

Bug description:
  I have a Dell PowerEdge 1800 with Dell CERC 1.5/6ch RAID controller in
  it. Everything worked fine under Ubuntu 14.04.1. When I upgraded to
  16.04.1 the system won't boot. It can't find the root filesystem. I
  see errors about host adapter dead on the screen many times. This is
  with kernel 4.4.0-57 and with 4.8.0-32. When I switch back to kernel
  3.13.0-105 the system boots just fine.

  I have mptbios 5.06.04.
  The CERC card says bios version 4.1-0 [Build 7403]

  When booting into the ercovery kernel I'm getting error messages about host 
adapter dead.
  Eventually I get a message:
  "aacraid: aac_fib_send: first asynchronous command timed out.
  Usually a result of a PCI interrupt routing problem
  update moher board BIOS or consider utilizing one of
  the SAFE mode kernel options (acpi, apic etc)"

  
  Using kernel parameter "intel_iommu=on" doesn't help. This was suggested on a 
post that I saw about these errors.

  Booting with "noapic" didn't help.
  Booting with "noapic noacpi" didn't help.

  
  I've also tried the dkms modules from Adaptec and that doesn't seem to help 
either.

  
  I can't figure out how to upgrade the firmware or BIOS on the system from 
Ubuntu either.

  
  This may be related to this bug: 
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1552551?comments=all

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