This is more of a physical question.

I am considering a system set up of a superconductor connected to a 
non-superconducting metal. As in: [Lead][Conductor][Superconductor]
In Kwant I set the superconductor up with an electron lattice and a hole 
lattice.

I can simulate this is two ways; one is the superconductor as a lead, and the 
other is the superconductor as part of the scattering system. 

So, [Lead][Conductor Region][Superconducting Lead] or [Lead][Conductor 
Region][Superconductor Region]

If I look at the conduction between the electron and the hole lead on the left 
leads, I simulate slightly different conduction values for the case of the SC 
in the scattering region and the SC as a lead on the right side.

Physically, as I understand it, there should be basically no difference at 
least at low enough energy values. Is the slight difference due to this "low 
enough energy" threshold, or am I missing something physical or numerical from 
kwant that would cause this difference to exist regardless?

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