I don't think this issue is related to Derby because I am seeing this
problem too -- but I am not using Derby.

What version of Tomcat are you using?  I am using 6.0.24 on either
Windows or Solaris 10 and see these errors too, like:

Feb 3, 2010 10:49:22 PM org.apache.catalina.loader.WebappClassLoader
clearThreadLocalMap
SEVERE: A web application created a ThreadLocal with key of type
[java.lang.ThreadLocal] (value [java.lang.threadlo...@1a517bd]) and a
value of type [scala.collection.mutable.HashMap] (value [Map()]) but
failed to remove it when the web application was stopped. To prevent a
memory leak, the ThreadLocal has been forcibly removed.
Feb 3, 2010 10:49:22 PM org.apache.catalina.loader.WebappClassLoader
clearThreadLocalMap
SEVERE: A web application created a ThreadLocal with key of type
[java.lang.ThreadLocal] (value [java.lang.threadlo...@258c74]) and a
value of type [net.liftweb.common.Empty$] (value [Empty]) but failed
to remove it when the web application was stopped. To prevent a memory
leak, the ThreadLocal has been forcibly removed.
Feb 3, 2010 10:49:22 PM org.apache.catalina.loader.WebappClassLoader
clearThreadLocalMap
SEVERE: A web application created a ThreadLocal with key of type
[java.lang.ThreadLocal] (value [java.lang.threadlo...@258c74]) and a
value of type [net.liftweb.common.Empty$] (value [Empty]) but failed
to remove it when the web application was stopped. To prevent a memory
leak, the ThreadLocal has been forcibly removed.
Feb 3, 2010 10:49:22 PM org.apache.catalina.loader.WebappClassLoader
clearThreadLocalMap
SEVERE: A web application created a ThreadLocal with key of type
[org.slf4j.impl.CopyOnInheritThreadLocal] (value
[org.slf4j.impl.copyoninheritthreadlo...@1bb35b]) and a value of type
[null] (value [null]) but failed to remove it when the web application
was stopped. To prevent a memory leak, the ThreadLocal has been
forcibly removed.
Feb 3, 2010 10:49:22 PM org.apache.catalina.loader.WebappClassLoader
clearThreadLocalMap

Note that while there is a Lift object, there are also lots of other
objects, so I'm not convinced that there is a problem with Lift...

I got the impression that Tomcat added this detection logic in
6.0.24.  I don't know how to really fix it.  (BTW, I found that I
usually only need to kill, not a kill -9.)

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