On 23 Jan 2007, at 15:55, David Withers wrote:
Arek Kasprzyk wrote:
On 23 Jan 2007, at 13:11, David Withers wrote:
Hi Arek,
I've been trying to integrate attribute lists with taverna. The first
problem I've come across is that the AttributeList elements disappear
from the xml document when using DatasetConfigXMLUtils. This seems
to be
because AttributeList is not in the dtd
(data/XML/DatasetConfig.dtd). Is
there a dtd for AttributeList that I can use?
David.
Hmm ... I am not sure if this is just the matter of adding
AttributeList
to the dtd.
martj maybe oblivious about this 'construct' altogether. Richard -
did we
add _any_ support for AttributeList to martj for 0.5? If not, how much
work would
it be required there?
There's an AttributeList object and AttributeCollection knows about
AttributeLists. If I use a sax parser that doesn't check the dtd the
AttributeList objects seem to be populated correctly.
Which part of the martj code are you actually reusing David?
I'm using code from the org.ensembl.mart.lib.config package:
DatasetConfigXMLUtils, DatasetConfig and the Attribute/Filter objects.
ok, t if you were willing to tweak it a bit
on your side it would just mean splitting an AttributeList into
individual
attributes and populating a Query object (or whatever equivalent you
have on your side)
to issue a query with individual attributes or alternatively you could
wait
until we put a fix on our web service side to accept queries with a
AttributeList names
rather than just individual attributes as it is at the moment
a.
David.
--
David Withers
School of Computer Science, University of Manchester,
Oxford Road, Manchester, M13 9PL, UK.
Tel: +44(0)161 275 0145
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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