HI Andrew That suggests that either it doesnt work or there is something specific to your XMLs. Let me explore this and I will get back to you once I confirm it this works on my side or not .
cheers Syed On Mon, 2007-05-14 at 11:30 -0500, Vallejos, Andrew wrote: > Syed, > > Well I ask because the marj tools will not let me export the IPI config > file. It tells me that the importable has an error. > > Andrew > > -----Original Message----- > From: Syed Haider [mailto:[EMAIL PROTECTED] > Sent: Monday, May 14, 2007 11:25 AM > To: Vallejos, Andrew > Cc: mart-dev; Arek Kasprzyk > Subject: RE: [mart-dev] Linking Question > > Hi Andrew > It should. I can see you are doing this in the reverse linking of your > datasets, and it made me thinking for a while. I would suggest the same > methodology. Remove the link which you got working a while ago. Keep > only this pair for linking (where you have a filter in Options), and see > if it works. If it doesnt, let us know and we will explore the reason. > Good luck! > > Cheers > Syed > > On Mon, 2007-05-14 at 11:18 -0500, Vallejos, Andrew wrote: > > Thanks again, > > > > Another question, is it possible to set an Importable to a filter > option > > in a list filter? > > > > -Andrew > > > > -----Original Message----- > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > Sent: Monday, May 14, 2007 11:11 AM > > To: Vallejos, Andrew; mart-dev; Arek Kasprzyk > > Subject: RE: [mart-dev] Linking Question > > > > > > Good, seems the trick worked. you may apply the same trick in the > other > > way around. > > > > Feel free to write back for any further help > > Goodluck :) > > > > cheers > > syed > > > > > > On Mon, 2007-05-14 at 11:01 -0500, Vallejos, Andrew wrote: > > > Hi Syed, > > > > > > Excellent, IPI was able to link to RGD. > > > > > > Thanks, > > > > > > Andrew > > > > > > -----Original Message----- > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > Sent: Monday, May 14, 2007 10:46 AM > > > To: Vallejos, Andrew; mart-admin > > > Subject: RE: [mart-dev] Linking Question > > > > > > Hi Andrew > > > Hope you dont mind cleaning your XML a little bit for testing the > > > following. > > > > > > First, just try to establish one way linking and declare an > exportable > > > attribute in 'rgd' DATASET and an importable filter in 'ipi' > DATASET, > > > and plz do not hide this filter as you are doing this at the moment. > > > > > > Also remove the other link which runs from 'ipi' to 'rgd'. > > > Once done this, export your XMLs. and then check if this establishes > > the > > > linking correctly. > > > > > > Cheers > > > Syed > > > > > > > > > On Mon, 2007-05-14 at 10:18 -0500, Vallejos, Andrew wrote: > > > > We are running BioMart 0.4, and I have MartJ Tools v0.4 as well. > > > > > > > > Thanks, > > > > > > > > Andrew > > > > > > > > -----Original Message----- > > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > > Sent: Monday, May 14, 2007 10:16 AM > > > > To: Vallejos, Andrew > > > > Cc: Arek Kasprzyk; [email protected] > > > > Subject: RE: [mart-dev] Linking Question > > > > > > > > Hi Andrew > > > > > > > > Could you send the following: > > > > - your martj version ? > > > > - which biomart-perl version > > > > - your xmls (save all using Marteditor) > > > > > > > > Cheers > > > > Syed > > > > > > > > > > > > > > > > On Mon, 2007-05-14 at 09:51 -0500, Vallejos, Andrew wrote: > > > > > >just to make sure that we understand you correctly .... > > > > > > > > > > >do you have two sets of identically named exportables and > > > importables > > > > > > > > > >in both marts > > > > > >or just a set of importables in one mart and a set of > > exportables > > > in > > > > > > > > > >the other? > > > > > > > > > > I have a set of export/import in each mart. All four (two each) > > > > identically named 'rgd_id'. > > > > > > > > > > --Andrew > > > > > > > > > > -----Original Message----- > > > > > From: Arek Kasprzyk [mailto:[EMAIL PROTECTED] > > > > > Sent: Monday, May 14, 2007 9:41 AM > > > > > To: Vallejos, Andrew > > > > > Cc: [email protected] > > > > > Subject: Re: [mart-dev] Linking Question > > > > > > > > > > > > > > > On 14 May 2007, at 15:29, Vallejos, Andrew wrote: > > > > > > > > > > > Hi, > > > > > > > > > > > > I am trying to link two marts together. I've done it before, > so > > I > > > > am > > > > > > at a loss as to what I am missing. > > > > > > > > > > > > I have set exportables and importables in both marts, but only > > one > > > > of > > > > > > the marts will link to the other. I've gone over the > > importables > > > > and > > > > > > exportables and I don't see anything wrong with either of > them. > > > > They > > > > > > are both in the same schema (mart configuration) because I > know > > > that > > > > > > > > > > is necessary. > > > > > > > > > > > > Is there something else that I could be missing? > > > > > > > > > > > > > > > > just to make sure that we understand you correctly .... > > > > > > > > > > do you have two sets of identically named exportables and > > > importables > > > > > > > > > in both marts > > > > > or just a set of importables in one mart and a set of > exportables > > > in > > > > > > > > > the other? > > > > > > > > > > > > > > > > > > > > > > > > > > Thanks, > > > > > > > > > > > > Andrew > > > > > > > > > > > > -- > > > > > > > > > > > > > > > > > > > > > > > > Andrew Vallejos > > > > > > > > > > > > Web Developer, Department of Physiology/BBC > > > > > > > > > > > > Medical College of Wisconsin > > > > > > > > > > > > 8701 Watertown Plank Road > > > > > > > > > > > > Milwaukee, WI, USA > > > > > > > > > > > > Phone: (414) 955-4104 > > > > > > > > > > > > Email: [EMAIL PROTECTED] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > ------------------------------------------------------------------------ > > > > > > > > > ------- > > > > > Arek Kasprzyk > > > > > EMBL-European Bioinformatics Institute. > > > > > Wellcome Trust Genome Campus, Hinxton, > > > > > Cambridge CB10 1SD, UK. > > > > > Tel: +44-(0)1223-494606 > > > > > Fax: +44-(0)1223-494468 > > > > > > > > > > > > > > > ------------------------------------------------------------------------ > > > > > > > > > ------- > > > > > > > > > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
