Hi Andrew Thanks for your reply, I tried your XML and MartEditor prevents 'export' because of the fact that current system does not support such LIST Filters to be associated with Importables. If you declare the same filter (say rgd_id) independently, it would work. The work around would be to do this, and set this independent fitler's hideDisplay = true. Effectively it wont turn up in MartView and would establish the linking as well.
Hope that helps. Cheers Syed On Thu, 2007-05-17 at 15:57 -0500, Vallejos, Andrew wrote: > Syed, > > I apologize for the delay, but I was out of the office for the past > couple of days. > > Here is XML of the file that will not export from the martj tools. > > -Andrew > > -----Original Message----- > From: Syed Haider [mailto:[EMAIL PROTECTED] > Sent: Tuesday, May 15, 2007 5:10 AM > To: Vallejos, Andrew; [email protected] > Subject: RE: [mart-dev] Linking Question > > Hi Andrew > regarding IPI DATASET XML: > The reason may well be that your option internal name in the filter is > rgd_id_list, which is not being used anywhere in importable. You also > have another filter whose name is 'rgd_id'. > Try cleaning some duplications from XML please and see if it works. > > Cheers > Syed > > > On Mon, 2007-05-14 at 11:30 -0500, Vallejos, Andrew wrote: > > Syed, > > > > Well I ask because the marj tools will not let me export the IPI > config > > file. It tells me that the importable has an error. > > > > Andrew > > > > -----Original Message----- > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > Sent: Monday, May 14, 2007 11:25 AM > > To: Vallejos, Andrew > > Cc: mart-dev; Arek Kasprzyk > > Subject: RE: [mart-dev] Linking Question > > > > Hi Andrew > > It should. I can see you are doing this in the reverse linking of your > > datasets, and it made me thinking for a while. I would suggest the > same > > methodology. Remove the link which you got working a while ago. Keep > > only this pair for linking (where you have a filter in Options), and > see > > if it works. If it doesnt, let us know and we will explore the reason. > > Good luck! > > > > Cheers > > Syed > > > > On Mon, 2007-05-14 at 11:18 -0500, Vallejos, Andrew wrote: > > > Thanks again, > > > > > > Another question, is it possible to set an Importable to a filter > > option > > > in a list filter? > > > > > > -Andrew > > > > > > -----Original Message----- > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > Sent: Monday, May 14, 2007 11:11 AM > > > To: Vallejos, Andrew; mart-dev; Arek Kasprzyk > > > Subject: RE: [mart-dev] Linking Question > > > > > > > > > Good, seems the trick worked. you may apply the same trick in the > > other > > > way around. > > > > > > Feel free to write back for any further help > > > Goodluck :) > > > > > > cheers > > > syed > > > > > > > > > On Mon, 2007-05-14 at 11:01 -0500, Vallejos, Andrew wrote: > > > > Hi Syed, > > > > > > > > Excellent, IPI was able to link to RGD. > > > > > > > > Thanks, > > > > > > > > Andrew > > > > > > > > -----Original Message----- > > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > > Sent: Monday, May 14, 2007 10:46 AM > > > > To: Vallejos, Andrew; mart-admin > > > > Subject: RE: [mart-dev] Linking Question > > > > > > > > Hi Andrew > > > > Hope you dont mind cleaning your XML a little bit for testing the > > > > following. > > > > > > > > First, just try to establish one way linking and declare an > > exportable > > > > attribute in 'rgd' DATASET and an importable filter in 'ipi' > > DATASET, > > > > and plz do not hide this filter as you are doing this at the > moment. > > > > > > > > Also remove the other link which runs from 'ipi' to 'rgd'. > > > > Once done this, export your XMLs. and then check if this > establishes > > > the > > > > linking correctly. > > > > > > > > Cheers > > > > Syed > > > > > > > > > > > > On Mon, 2007-05-14 at 10:18 -0500, Vallejos, Andrew wrote: > > > > > We are running BioMart 0.4, and I have MartJ Tools v0.4 as well. > > > > > > > > > > Thanks, > > > > > > > > > > Andrew > > > > > > > > > > -----Original Message----- > > > > > From: Syed Haider [mailto:[EMAIL PROTECTED] > > > > > Sent: Monday, May 14, 2007 10:16 AM > > > > > To: Vallejos, Andrew > > > > > Cc: Arek Kasprzyk; [email protected] > > > > > Subject: RE: [mart-dev] Linking Question > > > > > > > > > > Hi Andrew > > > > > > > > > > Could you send the following: > > > > > - your martj version ? > > > > > - which biomart-perl version > > > > > - your xmls (save all using Marteditor) > > > > > > > > > > Cheers > > > > > Syed > > > > > > > > > > > > > > > > > > > > On Mon, 2007-05-14 at 09:51 -0500, Vallejos, Andrew wrote: > > > > > > >just to make sure that we understand you correctly .... > > > > > > > > > > > > >do you have two sets of identically named exportables and > > > > importables > > > > > > > > > > > >in both marts > > > > > > >or just a set of importables in one mart and a set of > > > exportables > > > > in > > > > > > > > > > > >the other? > > > > > > > > > > > > I have a set of export/import in each mart. All four (two > each) > > > > > identically named 'rgd_id'. > > > > > > > > > > > > --Andrew > > > > > > > > > > > > -----Original Message----- > > > > > > From: Arek Kasprzyk [mailto:[EMAIL PROTECTED] > > > > > > Sent: Monday, May 14, 2007 9:41 AM > > > > > > To: Vallejos, Andrew > > > > > > Cc: [email protected] > > > > > > Subject: Re: [mart-dev] Linking Question > > > > > > > > > > > > > > > > > > On 14 May 2007, at 15:29, Vallejos, Andrew wrote: > > > > > > > > > > > > > Hi, > > > > > > > > > > > > > > I am trying to link two marts together. I've done it > before, > > so > > > I > > > > > am > > > > > > > at a loss as to what I am missing. > > > > > > > > > > > > > > I have set exportables and importables in both marts, but > only > > > one > > > > > of > > > > > > > the marts will link to the other. I've gone over the > > > importables > > > > > and > > > > > > > exportables and I don't see anything wrong with either of > > them. > > > > > They > > > > > > > are both in the same schema (mart configuration) because I > > know > > > > that > > > > > > > > > > > > is necessary. > > > > > > > > > > > > > > Is there something else that I could be missing? > > > > > > > > > > > > > > > > > > > just to make sure that we understand you correctly .... > > > > > > > > > > > > do you have two sets of identically named exportables and > > > > importables > > > > > > > > > > > in both marts > > > > > > or just a set of importables in one mart and a set of > > exportables > > > > in > > > > > > > > > > > the other? > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Thanks, > > > > > > > > > > > > > > Andrew > > > > > > > > > > > > > > -- > > > > > > > > > > > > > > > > > > > > > > > > > > > > Andrew Vallejos > > > > > > > > > > > > > > Web Developer, Department of Physiology/BBC > > > > > > > > > > > > > > Medical College of Wisconsin > > > > > > > > > > > > > > 8701 Watertown Plank Road > > > > > > > > > > > > > > Milwaukee, WI, USA > > > > > > > > > > > > > > Phone: (414) 955-4104 > > > > > > > > > > > > > > Email: [EMAIL PROTECTED] > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > ------------------------------------------------------------------------ > > > > > > > > > > > ------- > > > > > > Arek Kasprzyk > > > > > > EMBL-European Bioinformatics Institute. > > > > > > Wellcome Trust Genome Campus, Hinxton, > > > > > > Cambridge CB10 1SD, UK. > > > > > > Tel: +44-(0)1223-494606 > > > > > > Fax: +44-(0)1223-494468 > > > > > > > > > > > > > > > > > > > > > ------------------------------------------------------------------------ > > > > > > > > > > > ------- > > > > > > > > > > > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
