Hi Mathew Its nasty but first lets get you going, then we can address the problem as well. As you mentioned that its adding an empty string, remove 'exit;' from configure.pl. hint: it comes after 2 lines from
print " please install the following modules:\n\n"; Regards syed On Wed, 2007-07-11 at 14:54 +1000, Matthew Hobbs wrote: > Hi Syed, > > > Syed Haider wrote: > > > > You need to set the apache binary path in settings.conf, your host and > > port as well. Once done, then do > > > > biomart-perl$> perl bin/configure.pl -r conf/defaultMartRegistry.xml > > --clean > > > > see the on screen instructions for any thing informative > > This is what I do: > - check out a fresh biomart-perl > - edit conf/settings.conf > - run the configure.pl script exactly as you indicate > - press return when asked about API installation > > The output from the script is: > > Do you want to install in API only mode [y/n] [n]: > > Checking prerequisites ... please install the following modules: > > > > [EMAIL PROTECTED] biomart-perl]# > > > So... no go. > > After subsequent tampering with the configure.pl script I have come to > believe that the script is including the empty string as the name of a > required module. Why would this be?? > > > Matthew > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
