Hi Eric Just for testing sake, try to start the server as sudo. If this works, then its definitely write permissions problem. You can fix this by modifying the httpd.conf manually by adding the user directive. cheers syed
On Mon, 2008-02-04 at 11:37 -0500, Wooten, Eric wrote: > Full outputs in the attached file; also attached httpd.conf. > > Trying to simplify matters, I used the unmodified /registryURLPointer.xml > file for the --clean configuration that you suggested. I get permissions > errors if I don't use sudo (though it would appear that I have full > privileges in the folders at issue; maybe this is where the problem > starts?). > > At any rate, got the same end result. > > Thanks for taking a look at all this. > Eric > > > On 2/2/08 6:36 AM, "Syed Haider" <[EMAIL PROTECTED]> wrote: > > > Hi Eric, > > > > - send me the onscreen response when you run > > perl bin/configure.pl -r conf/your_registry.xml --clean > > > > - once you run this, it regenerates conf/httpd.conf, send it to me. > > > > - kill and restart your sever, and let me know what you get in terminal > > and send me logs/error_log as well. > > > > thanks > > syed > > > > > > On Fri, 2008-02-01 at 17:04 -0500, Wooten, Eric wrote: > >> Hi...I'm having problems getting martview running. Upon issuing this > >> command: > >> /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf > >> > >> I get this: > >> Syntax error on line 44 of /usr/local/biomart-perl/conf/httpd.conf: > >> Can't locate Exception/Class.pm in @INC (@INC contains: > >> /usr/local/biomart-perl/lib [...many other paths...] at > >> /usr/local/biomart-perl/lib/BioMart/Exception.pm line 86.\nBEGIN > >> failed--compilation aborted at > >> /usr/local/biomart-perl/lib/BioMart/Exception.pm line 86.\nCompilation > >> failed in require at > >> /usr/local/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line > >> 40.\nBEGIN failed--compilation aborted at > >> /usr/local/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line > >> 40.\n\t(in cleanup) > >> > >> Needless to say, Exception.pm is indeed at its httpd.conf-anticipated > >> location. > >> Any thoughts on this? I've found some cryptic descriptions of a problem not > >> unlike this in the archive, but no solutions (other than ~"it started > >> working"). I'm using Apache 2.2.6 and mod_perl 2.0.2; OSX10.5.1; martj 0.6. > >> > >> Thanks in advance, > >> Eric > >> > >> > >> ----------------------- > >> Eric C. Wooten Ph.D. > >> Tufts-New England Medical Center > >> ----------------------- > >> > > > > ----------------------- > Eric C. Wooten Ph.D. > [EMAIL PROTECTED] > (617) 636-7433 > ----------------------- > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
