Hi Eric, On Mon, 2008-02-04 at 17:25 -0500, Wooten, Eric wrote: > Does this error mean anything to you (in response to sudo /usr/sbin/httpd -d > $PWD -f $PWD/conf/httpd.conf): > > > > > dyld: lazy symbol binding failed: Symbol not found: _Perl_newXS_flags > > Referenced from: > > /usr/local/ActivePerl-5.8/site/lib/auto/Digest/SHA/SHA.bundle > > Expected in: dynamic lookup > > > > dyld: Symbol not found: _Perl_newXS_flags > > Referenced from: > > /usr/local/ActivePerl-5.8/site/lib/auto/Digest/SHA/SHA.bundle > > Expected in: dynamic lookup > > > > Trace/BPT trap > >
pardon my knowledge on this. > I think the issue may be that 10.5 includes a 64-bit version of apache2...I > tried making Digest::SHA for x86_64 (and succeeded in quashing a previous > complaint about incompatible architecture), but now this error turns up and > is particularly uninformative, at least to me. > > Should I just compile a separate, 32-bit targeted apache2 and use that? Or > have you heard of successful work-arounds using the version included with > 10.5? Again, I cant suggest anything concrete, I would compile a 32-bit version and see if it fixes the problem. If this turns out to be the case, I would appreciate your feedback. syed > Thanks so much for your help to get this far, > Eric > > > On 2/4/08 12:10 PM, "Syed Haider" <[EMAIL PROTECTED]> wrote: > > > yes, i would recommend to have a clean installation. its most certainly > > because of problematic installation. > > > > thanks > > syed > > > > On Mon, 2008-02-04 at 12:05 -0500, Wooten, Eric wrote: > >> That's the weird part...cpan reports that Exception::Class is up to date > >> (1.23). This was actually the first thing I checked. I've verified that > >> it's > >> where it thinks it is. Perhaps I should just try reinstalling it? > >> > >> > >> > >> > >> On 2/4/08 12:01 PM, "Syed Haider" <[EMAIL PROTECTED]> wrote: > >> > >>> Eric, > >>> install the following module, it seems missing. > >>> > >>> http://search.cpan.org/~drolsky/Exception-Class-1.23/lib/Exception/Class.pm > >>> > >>> and then redo the configure and restart the server (sudo). > >>> > >>> cheers > >>> syed > >>> > >>> > >>> > >>> On Mon, 2008-02-04 at 11:55 -0500, Wooten, Eric wrote: > >>>> Seems the same (though there's no new entry in the error_log): > >>>> > >>>> ecwooten$ sudo /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf > >>>> Syntax error on line 44 of > >>>> /Library/WebServer/Documents/biomart/conf/httpd.conf: > >>>> Can't locate Exception/Class.pm in @INC (@INC contains: > >>>> /Library/WebServer/Documents/biomart/lib > >>>> /System/Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /System/Library/Perl/5.8.8 /Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /Library/Perl/5.8.8 /Library/Perl > >>>> /Network/Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /Network/Library/Perl/5.8.8 /Network/Library/Perl > >>>> /System/Library/Perl/Extras/5.8.8/darwin-thread-multi-2level > >>>> /System/Library/Perl/Extras/5.8.8 > >>>> /Library/Perl/5.8.6/darwin-thread-multi-2level /Library/Perl/5.8.6 > >>>> /Library/Perl/5.8.1 . /Library/WebServer/Documents/biomart) at > >>>> /Library/WebServer/Documents/biomart/lib/BioMart/Exception.pm line > >>>> 86.\nBEGIN failed--compilation aborted at > >>>> /Library/WebServer/Documents/biomart/lib/BioMart/Exception.pm line > >>>> 86.\nCompilation failed in require at > >>>> > /Library/WebServer/Documents/biomart/lib/BioMart/Configuration/DBLocation.p>>>> > m > >>>> line 40.\nBEGIN failed--compilation aborted at > >>>> > /Library/WebServer/Documents/biomart/lib/BioMart/Configuration/DBLocation.p>>>> > m > >>>> line 40.\n\t(in cleanup) Can't locate Exception/Class.pm in @INC (@INC > >>>> contains: /Library/WebServer/Documents/biomart/lib > >>>> /System/Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /System/Library/Perl/5.8.8 /Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /Library/Perl/5.8.8 /Library/Perl > >>>> /Network/Library/Perl/5.8.8/darwin-thread-multi-2level > >>>> /Network/Library/Perl/5.8.8 /Network/Library/Perl > >>>> /System/Library/Perl/Extras/5.8.8/darwin-thread-multi-2level > >>>> /System/Library/Perl/Extras/5.8.8 > >>>> /Library/Perl/5.8.6/darwin-thread-multi-2level /Library/Perl/5.8.6 > >>>> /Library/Perl/5.8.1 . /Library/WebServer/Documents/biomart) at > >>>> /Library/WebServer/Documents/biomart/lib/BioMart/Exception.pm line > >>>> 86.\nBEGIN failed--compilation aborted at > >>>> /Library/WebServer/Documents/biomart/lib/BioMart/Exception.pm line > >>>> 86.\nCompilation failed in require at > >>>> > /Library/WebServer/Documents/biomart/lib/BioMart/Configuration/DBLocation.p>>>> > m > >>>> line 40.\nBEGIN failed--compilation aborted at > >>>> > /Library/WebServer/Documents/biomart/lib/BioMart/Configuration/DBLocation.p>>>> > m > >>>> line 40.\nCompilation failed in require at > >>>> /Library/WebServer/Documents/biomart/conf/httpd.conf line 55.\n > >>>> > >>>> > >>>> On 2/4/08 11:53 AM, "Syed Haider" <[EMAIL PROTECTED]> wrote: > >>>> > >>>>> Hi Eric > >>>>> Just for testing sake, try to start the server as sudo. If this works, > >>>>> then its definitely write permissions problem. You can fix this by > >>>>> modifying the httpd.conf manually by adding the user directive. > >>>>> cheers > >>>>> syed > >>>>> > >>>>> > >>>>> On Mon, 2008-02-04 at 11:37 -0500, Wooten, Eric wrote: > >>>>>> Full outputs in the attached file; also attached httpd.conf. > >>>>>> > >>>>>> Trying to simplify matters, I used the unmodified > >>>>>> /registryURLPointer.xml > >>>>>> file for the --clean configuration that you suggested. I get > >>>>>> permissions > >>>>>> errors if I don't use sudo (though it would appear that I have full > >>>>>> privileges in the folders at issue; maybe this is where the problem > >>>>>> starts?). > >>>>>> > >>>>>> At any rate, got the same end result. > >>>>>> > >>>>>> Thanks for taking a look at all this. > >>>>>> Eric > >>>>>> > >>>>>> > >>>>>> On 2/2/08 6:36 AM, "Syed Haider" <[EMAIL PROTECTED]> wrote: > >>>>>> > >>>>>>> Hi Eric, > >>>>>>> > >>>>>>> - send me the onscreen response when you run > >>>>>>> perl bin/configure.pl -r conf/your_registry.xml --clean > >>>>>>> > >>>>>>> - once you run this, it regenerates conf/httpd.conf, send it to me. > >>>>>>> > >>>>>>> - kill and restart your sever, and let me know what you get in > >>>>>>> terminal > >>>>>>> and send me logs/error_log as well. > >>>>>>> > >>>>>>> thanks > >>>>>>> syed > >>>>>>> > >>>>>>> > >>>>>>> On Fri, 2008-02-01 at 17:04 -0500, Wooten, Eric wrote: > >>>>>>>> Hi...I'm having problems getting martview running. Upon issuing this > >>>>>>>> command: > >>>>>>>> /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf > >>>>>>>> > >>>>>>>> I get this: > >>>>>>>> Syntax error on line 44 of /usr/local/biomart-perl/conf/httpd.conf: > >>>>>>>> Can't locate Exception/Class.pm in @INC (@INC contains: > >>>>>>>> /usr/local/biomart-perl/lib [...many other paths...] at > >>>>>>>> /usr/local/biomart-perl/lib/BioMart/Exception.pm line 86.\nBEGIN > >>>>>>>> failed--compilation aborted at > >>>>>>>> /usr/local/biomart-perl/lib/BioMart/Exception.pm line > >>>>>>>> 86.\nCompilation > >>>>>>>> failed in require at > >>>>>>>> /usr/local/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line > >>>>>>>> 40.\nBEGIN failed--compilation aborted at > >>>>>>>> /usr/local/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line > >>>>>>>> 40.\n\t(in cleanup) > >>>>>>>> > >>>>>>>> Needless to say, Exception.pm is indeed at its httpd.conf-anticipated > >>>>>>>> location. > >>>>>>>> Any thoughts on this? I've found some cryptic descriptions of a > >>>>>>>> problem > >>>>>>>> not > >>>>>>>> unlike this in the archive, but no solutions (other than ~"it started > >>>>>>>> working"). I'm using Apache 2.2.6 and mod_perl 2.0.2; OSX10.5.1; > >>>>>>>> martj > >>>>>>>> 0.6. > >>>>>>>> > >>>>>>>> Thanks in advance, > >>>>>>>> Eric > >>>>>>>> > >>>>>>>> > >>>>>>>> ----------------------- > >>>>>>>> Eric C. Wooten Ph.D. > >>>>>>>> Tufts-New England Medical Center > >>>>>>>> ----------------------- > >>>>>>>> > >>>>>>> > >>>>>> > >>>>>> ----------------------- > >>>>>> Eric C. Wooten Ph.D. > >>>>>> [EMAIL PROTECTED] > >>>>>> (617) 636-7433 > >>>>>> ----------------------- > >>>>>> > >>>>>> > >>>> > >>>> ----------------------- > >>>> Eric C. Wooten Ph.D. > >>>> [EMAIL PROTECTED] > >>>> (617) 636-7433 > >>>> ----------------------- > >>>> > >> > >> ----------------------- > >> Eric C. Wooten Ph.D. > >> [EMAIL PROTECTED] > >> (617) 636-7433 > >> ----------------------- > >> > > ----------------------- > Eric C. Wooten Ph.D. > [EMAIL PROTECTED] > (617) 636-7433 > ----------------------- >
