Hello Syed I got it to work, thanks :-)
Syed Haider wrote:
Hi Isabelle, $confFile, you need to set this to the registry file on your local machine. Some example registry files are under biomart-perl/conf/*.xml the best way to begin is to use conf/martDBLocation.xml
that's only if I have a local database. For demo purposes, students will connect to existing repositories and use martURLLocation.
place your perl script under e.g biomart-perl/scripts
this is not necessary. Students will not be able to write to the biomart-perl install directory anyway...
set the $confFile variable to the said registry file. make sure, you set the environment variable PERL5LIB pointing to your perl modules plus path to biomart-perl/lib/
I used the -I option and it worked fine :-) best greetings, Isabelle -- Isabelle Phan, D.Phil. Swiss Institute of Bioinformatics Tel: (+41 22) 379 51 89 CMU - 1, rue Michel Servet Fax: (+41 22) 379 58 58 CH - 1211 Geneva 4 Switzerland email: [EMAIL PROTECTED]
