Hello Syed
many thanks for helping me out.
It seems the taverna crash problem was the memory. I increased it to 512
and now it seems to work, hurray :-)
There is still something weird: the Gene Name attribute is rendered in
taverna as
hsapiens_gene_ensembl.external_gene_id
I now managed to display the ensembl ID in the results, but still cannot
figure out how to get the other attributes to display in the workflow
output :-(
My test workflow is simple:
input= Ensembl Homo sapiens genes
processor= chromosome name
output= gene_id and gene_names
so entering a value of '11' as input would list all genes on that chromosome.
Syed Haider wrote:
Isabelle,
thats fine too. As long as you are not using the following filters
- chromosome_start,
- chromosome_end,
- bands,
- markers,
in Ensembl Variation Mart, the rest should work. The said filters had a
configuration problem which has been fixed. The central server will be
updated soon to reflect the updates.
regards
syed
On Fri, 2008-04-04 at 16:47 +0200, Isabelle Phan wrote:
over all genes (no filter).
sorry, my filter is chromosome 11
--
Isabelle Phan, D.Phil.
Swiss Institute of Bioinformatics Tel: (+41 22) 379 51 89
CMU - 1, rue Michel Servet Fax: (+41 22) 379 58 58
CH - 1211 Geneva 4 Switzerland email: [EMAIL PROTECTED]
