Hi Junjun, yes, the following command line ran OK with no error messages. perl bin/configure.pl -r conf/martDBLocation.xml --clean
But when I try to start with: /usr/local/apache/bin/httpd -d $PWD -f $PWD/conf/httpd.conf it does not work. I forget the error message. Could you please let me know how to start apache ? when apache is started, which link I can visit martview? Thank you so much! Ray ________________________________ From: Junjun Zhang [mailto:[email protected]] Sent: Fri 11/20/2009 2:54 PM To: Jing, Rui; [email protected] Subject: RE: [mart-dev] Having problem with web service client access to biomart Hi Ray, We need a bit of clarification for the problem, please scroll down. > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Jing, Rui > Sent: Friday, November 20, 2009 11:34 AM > To: [email protected] > Subject: RE: [mart-dev] Having problem with web service > client access to biomart > > Hello, > > I want to config biomart-perl. when I connect with martDBLocation: > perl bin/configure.pl -r conf/martDBLocation.xml --clean , > it looks ok What do you mean: it looks ok? Do you mean the above command line ran OK with no error message? If so, after that, did you try start apache, and check martview? > > I changed settgins.conf and registryURLPointer.xml. > v> $PWD/conf/httpd.conf > It does not work. Please do not use registryURLPointer, what you need is martDBLocation in order to make martview work with your own data marts. Best regards, Junjun Could you please let me know how to start > biomart and make the > link working > http://localhost:80/biomart-perl/martview <http://localhost/biomart-perl/martview> > > the followings are my conf (settings.conf and registryURLPointer.xml) > > 1. settings.conf > ################ httpd.conf settings #################### > [httpdSettings] > apacheBinary=/usr/local/apache/bin/httpd > serverHost=localhost > port=80 > # to use proxying set the proxy port below (even if its 80) > and set serverHost > as your proxy host > proxy= > # if apxs or apxs2 is not in default directory where httpd > lives, you may set > this param to point to apxs/2 > apxs= > location=biomart-perl ( which I installed into > /home/software/biomart-perl/ ) > > 2. registryURLPointer.xml > > name = "central_server" > host = "localhost" > port = "80" > path = "" > includeMarts = "msd,uniprot" > > Thanks, > > Ray > > > > The information in this e-mail is intended only for the > person to whom it is > addressed. If you believe this e-mail was sent to you in > error and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was > sent to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > >
