a- please set the location param in conf/settings.conf to
location=biomart
b- reconfigure the perl bin/configure.pl.... with --clean switch
c- kill and restart apache and then access the URL as:
http://node01.com:8011/biomart/martview
please send us what see in terminal after executing 'b'
thanks
Syed
Jing, Rui wrote:
Hi Syed,
Great. It started.
Processing Cached Registry:
/common/home/software/biomart-perl/conf/cachedRegistries/martDBLocation.xml.cach
ed
cat logs/httpd.pid
19006
but when I visit hthttp://node01.com:8011/biomart-perl/martview
<http://node01.com:8011/biomart-perl/martview>
it gave error: Oops! This link appears to be broken from IE.
I used martDBLocation.xml
perl bin/configure.pl -r conf/martDBLocation.xml --clean
settings.conf is:
5 apacheBinary=/common/home/software/biomart-perl/apache/bin/httpd
6 serverHost=localhost
7 port=8011
8 # to use proxying set the proxy port below (even if its 80) and set
serverHost as your proxy host
9 proxy=
10 # if apxs or apxs2 is not in default directory where httpd lives, you
may set this param to point to apxs/2
11 apxs=
12 location=/common/home/software/biomart-perl
13
please advise what the problem is.
Thanks,
Ray
________________________________
From: Syed Haider [mailto:[email protected]]
Sent: Thu 11/26/2009 8:39 AM
To: Jing, Rui
Cc: Junjun Zhang; Arek Kasprzyk; [email protected]
Subject: Re: [mart-dev] errors when starting martview
Hi Rui,
the only critical error is :
Syntax error on line 79 of /software/biomart-perl/conf/httpd.conf:
Invalid command 'PerlOptions', perhaps misspelled or defined by a module not
included in the server configuration
you would need to see the onscreen instrcutions when you run:
perl bin/configure.pl.....
you probably dont have mod_perl or somehting configured correctly.
Best,
Syed
Jing, Rui wrote:
Hi,
When I am starting martview, there are some error and warn, please advise how
to
solve the problem.
[r...@]> /software/biomart-perl/apache/bin/httpd -d $PWD -f
$PWD/conf/httpd.conf
[Thu Nov 26 08:06:56 2009] [warn] Useless use of AllowOverride in line 37 of
/common/home/hge/software/biomart-perl/conf/httpd.conf.
[Thu Nov 26 08:06:56 2009] [warn] Useless use of AllowOverride in line 45 of
/common/home/hge/software/biomart-perl/conf/httpd.conf.
[Thu Nov 26 08:06:56 2009] [warn] Useless use of AllowOverride in line 63 of
/common/home/hge/software/biomart-perl/conf/httpd.conf.
[Thu Nov 26 08:06:56 2009] [warn] Useless use of AllowOverride in line 73 of
/software/biomart-perl/conf/httpd.conf.
Syntax error on line 79 of /software/biomart-perl/conf/httpd.conf:
Invalid command 'PerlOptions', perhaps misspelled or defined by a module not
included in the server configuration
Thanks,
Ray
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