Did you try the thing about removing the config folder? It would be really useful to know the output of this command:
uname -a && java -version cheers, Richard On 21 Nov 2009, at 00:56, [email protected] wrote: > it still doesn't work after I reinstalled martj-0.7 binary. i use fedora 11. > > Thanks > > Dong > >> There is one quick thing you can do which will remove one possible cause >> (corrupt config files) - find your home directory, then find within it the >> .biomart or .martj folders (can't remember which one it is now) and >> delete/rename it. This will make MartEditor start up as if it were a clean >> install. If that does fix it, then the problem is most likely due to >> something that was broken in the config, e.g. pointing to a database which >> no longer exists. >> >> If that doesn't do it, then it sounds like something has changed locally >> then. It would still be useful to have the uname -a and java -version >> outputs to hand, as they would help work out what system you're using (for >> future reference if others have the same problem). >> >> Seeing as it used to work but has recently stopped - and I assume it used >> to work on this machine and not somewhere else - have you done a recent >> upgrade on any OS component, or recently installed or removed any other >> software? Have you recently upgraded to a newer version of BioMart, or >> updated the source if you're building from source? >> >> cheers, >> Richard >> >> On 20 Nov 2009, at 21:46, [email protected] wrote: >> >>> it used to work, and martbuilder still works >>> >>>> Hello, >>>> >>>> A bit more information will help diagnose your problem. Can you >>>> cut-and-paste the output from the following command line please: >>>> >>>> uname -a && java -version >>>> >>>> Also, what version of BioMart are you using, and did you download the >>>> binaries or did you build it from source? If source, which branch or >>>> tag >>>> in CVS did you check out? Did it used to work but has now stopped, or >>>> has >>>> it never worked? >>>> >>>> Does typing 'xterm' at the same prompt work? If not, you've probably >>>> got a >>>> general X windows misconfiguration. >>>> >>>> cheers, >>>> Richard >>>> >>>> On 20 Nov 2009, at 20:05, [email protected] wrote: >>>> >>>>> Hi, friends, >>>>> >>>>> I have a problem to start marteditor on my box, marteditor window >>>>> didn't >>>>> pop up when I type ./marteditor.sh, any suggestion? >>>>> >>>>> Thanks! >>>>> >>>>> Dong >>>>> >>>>> >>>>> -------------------------- >>>>> bin]# ./marteditor.sh >>>>> Starting MartEditor please wait .... >>>>> getting driver com.mysql.jdbc.Driver >>>>> >>>>> >>>>> ------------------------------------ >>>>> >>>>> >>>>> >>>> >>>> -- >>>> Richard Holland, BSc MBCS >>>> Operations and Delivery Director, Eagle Genomics Ltd >>>> T: +44 (0)1223 654481 ext 3 | E: [email protected] >>>> http://www.eaglegenomics.com/ >>>> >>>> >>> >>> >> >> -- >> Richard Holland, BSc MBCS >> Operations and Delivery Director, Eagle Genomics Ltd >> T: +44 (0)1223 654481 ext 3 | E: [email protected] >> http://www.eaglegenomics.com/ >> >> > > -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/
