Creating my own files, however, I'm not able to reproduce this here.
When I compile your test.tex, I get an error, even though it seems to have loaded the python.sty file. Not sure why (see attached log).
When I generate the plots "offline", and then hack test.tex to simply include the files, everything works fine, and I don't see a problem with the footers with either xpdf or acroread.
There was a recent bug discovered in matplotlib where PDF files weren't always getting flushed completely. I don't *think* that's the cause of this, but if you could reproduce what I did (generate the plots independently of TeX and then load them), and that works for you, that might point to something like that. There was also a bug a few months back where xpdf didn't like the way matplotlib handled reusing the same graphic multiple times (which is used for markers). That may be why you're seeing the footer bug and I'm not -- you didn't mention which version of matplotlib you're running, so it's hard to say.
Here's my versions of all the various moving pieces:
pdfTeX (Web2C 7.4.5) 3.14159-1.10b kpathsea version 3.4.5 Copyright (C) 1997-2003 Han The Thanh.
Beamer 3.00 python 2.5.2 matplotlib SVN (today) Acroread 8.1.1 xpdf 3.00That python.sty stuff looks really cool, by the way. I haven't come across it before.
Mike [EMAIL PROTECTED] wrote:
On Tue, Oct 14, 2008 at 08:21:08AM -0400, Michael Droettboom wrote:But I've never tried this combination of python.sty/Beamer/LaTeX personally. Can you send us the output of your plot on its own (ps or pdf...)?Mike Wow thanks. I was afraid no one would respond. I suppose if Matplotlib is so mature that we are left worrying about bugs when embedding it in Latex then it has come a long way. :) I created a tiny test.tex that shows the problem. Just type pdflatex -shell-escape test.tex ; xpdf test.pdf in the same directory with the 2 files test.tex and python.sty below and attached. I also attached the final PDF since you asked for it. \documentclass{beamer} \usepackage{beamerthemesplit} \usepackage{graphicx} \usepackage{python} \begin{document} \title[Example of zorder trouble]{Example of zorder trouble} \author[Matplotlib fan]{Matplotlib fan} \date{} \setbeamertemplate{navigation symbols}{} \frame{\titlepage} \begin{frame}[fragile]\frametitle{No zorder - notice footer ok} \begin{python} import pylab pylab.plot(range(10), range(10)) pylab.scatter([5], [5]) pylab.savefig('plot1.pdf') print r'\includegraphics[width=200pt]{plot1.pdf}' \end{python} \end{frame} \begin{frame}[fragile]\frametitle{zorder - notice footer messed up} \begin{python} import pylab pylab.plot(range(10), range(10), zorder = 1) pylab.scatter([5], [5], zorder = 9) pylab.savefig('plot2.pdf') print r'\includegraphics[width=200pt]{plot2.pdf}' \end{python} \end{frame} \end{document} %% This program is free software; you can redistribute it and/or %% modify it under the terms of the GNU General Public License %% as published by the Free Software Foundation; either version 2 %% of the License, or (at your option) any later version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. %% %% You should have received a copy of the GNU General Public License %% along with this program; if not, write to the Free Software %% Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. %% %% Author: Martin R. Ehmsen, [EMAIL PROTECTED] %% Department of Mathematics and Computer Science, %% University of Southern Denmark, DK %% %% You can find an online copy of the GPL at %% http://www.gnu.org/copyleft/gpl.html . %% %% Note: shell-escape needs to be activated for this to work. %% This can either be done by passing -shell-escape as an option to %% latex or by adding/changing "shell_escape = t" in your texmf.cnf . % 0.2 -> 0.21: Moved [EMAIL PROTECTED] from [EMAIL PROTECTED] and out, since % no more than 15 \newwrites are allowed (and the previous version created a new % every time [EMAIL PROTECTED] was called. \NeedsTeXFormat{LaTeX2e}[1994/12/01] \ProvidesPackage{python}[2007/06/07 v0.21 Python in LaTeX] [EMAIL PROTECTED] [EMAIL PROTECTED] \begingroup \catcode `|=0 \catcode `[=1 \catcode`]=2 \catcode `\{=12 \catcode `\}=12 \catcode`\\=12 |gdef|@xpython#1\end{python}[|immediate|write|@out[#1]|end[python]] |endgroup [EMAIL PROTECTED] [EMAIL PROTECTED]@python[]}} [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED] \newlinechar='15 \begingroup \catcode`\^^M=12 % [EMAIL PROTECTED] [EMAIL PROTECTED] \def\endpython{% \endgroup [EMAIL PROTECTED] [EMAIL PROTECTED] \immediate\write18{cat [EMAIL PROTECTED] | python > \jobname.py.out 2> \jobname.py.err} \immediate\input\jobname.py.out} %\immediate\write{\begin{verbatim}} %\immediate\input\jobname.py.err %\immediate\write{\end{verbatim}}} [EMAIL PROTECTED] [EMAIL PROTECTED] [EMAIL PROTECTED]"\jobname"} [EMAIL PROTECTED] % BUGS: % 1. If anything gets send to stderr then it should be included % in \begin{verbatim}...\end{verbatim} to be properly displayed % % \immediate\write18{cat [EMAIL PROTECTED] | python > \jobname.py.out 2>\jobname.py.err} % % 2. Watch out for indentation done by aucTeX in Emacs % % 3. Let the package accept a "final version" option, such % that the output of each python run is saved such that it can be % inserted into the document by hand % (conference, journals are not likely to compile with % shell_escape or have python). % % [EMAIL PROTECTED] % \def\prepython#1{% % [EMAIL PROTECTED] % } % sed -e 's/^ //g' cluster.py % [EMAIL PROTECTED] > \
-- Michael Droettboom Science Software Branch Operations and Engineering Division Space Telescope Science Institute Operated by AURA for NASA
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-------------------- Geometry parameters
paper: user defined
landscape: --
twocolumn: --
twoside: --
asymmetric: --
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v-parts: 0.0pt, 273.14662pt, 0.0pt
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vmarginratio: --
lines: --
heightrounded: --
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truedimen: --
includehead: true
includefoot: true
includemp: --
driver: pdftex
-------------------- Page layout dimensions and switches
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\paperheight 273.14662pt
\textwidth 307.28987pt
\textheight 244.6939pt
\oddsidemargin -43.81725pt
\evensidemargin -43.81725pt
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\skip\footins 10.0pt plus 4.0pt minus 2.0pt
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\mag 1000
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-----------------------
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l.2 \begin{python}
? X
Here is how much of TeX's memory you used:
7659 strings out of 95437
137262 string characters out of 1190232
211820 words of memory out of 1000001
10424 multiletter control sequences out of 10000+50000
6730 words of font info for 24 fonts, out of 500000 for 1000
14 hyphenation exceptions out of 1000
41i,15n,45p,341b,545s stack positions out of 1500i,500n,5000p,200000b,5000s
27 PDF objects out of 300000
4 named destinations out of 131072
36 words of extra memory for PDF output out of 65536
! pdfTeX warning (dest): name{Navigation3} has been referenced but does not exi
st, replaced by a fixed one
{/usr/share/texmf/dvips/tetex/f7b6d320.enc}</usr/share/texmf/fonts/type1/bluesk
y/cm/cmssbx10.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cmss10.pfb></usr/sha
re/texmf/fonts/type1/bluesky/cm/cmss12.pfb>
Output written on test.pdf (1 page, 15392 bytes).
test.tex
Description: TeX document
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