On 9/19/12 3:29 PM, Michael Rawlins wrote:
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*From:* Jeff Whitaker <jeffrey.s.whita...@noaa.gov>
*To:* Michael Rawlins <rawlin...@yahoo.com>
*Sent:* Wednesday, September 19, 2012 4:57 PM
*Subject:* Re: [Matplotlib-users] netcdf4-python build
On 9/19/12 2:43 PM, Michael Rawlins wrote:
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*From:* Johann Rohwer <j...@sun.ac.za> <mailto:j...@sun.ac.za>
*To:* matplotlib-users@lists.sourceforge.net
<mailto:matplotlib-users@lists.sourceforge.net>
*Sent:* Wednesday, September 19, 2012 3:22 PM
*Subject:* Re: [Matplotlib-users] netcdf4-python build
On 19/09/2012 21:14, Michael Rawlins wrote:
> Just installed h5utils from package manager. Getting same
errors. In
> package manager I'm searching on hdf5. If there's a package
there I'm
> missing, then it certainly is not obvious.
Try
libhdf5-serial
libhdf5-serial-dev
Johann
After installing those two packages I was able build with
setup.py <http://setup.py/> in netCDF4-1.0/
Last few lines of the build:
creating build/scripts.linux-i686-2.7
copying and adjusting utils/nc3tonc4 -> build/scripts.linux-i686-2.7
copying and adjusting utils/nc4tonc3 -> build/scripts.linux-i686-2.7
changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644
to 755
changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644
to 755
Here is my initialization:
from mpl_toolkits.basemap import Basemap, shiftgrid, cm
from netCDF4 import Dataset as NetCDFFile
Here is result of execution of script:
Traceback (most recent call last):
File "map_PrcpBias_Northeast.py
<http://map_prcpbias_northeast.py/>", line 21, in <module>
from netCDF4 import Dataset as NetCDFFile
Michael: Please include the full traceback - what you posted
doesn't really tell us anything.
How is full traceback obtained?
Michael: I just meant for you to paste the full output, not just the
first three lines.
Since you apparently have all the libs installed, I don't understand
what's going on. Please try deleting the netcdf4-python build
directory, and then run 'python setup.py build' again, capturing the
output in a file. Send me that file off-list and I'll see if I can
suggest something.
-Jeff
I understand using the python-netcdf package is an option.
Installed that but am getting an eror saying missing
libhdf5_hl.so.6 when trying:
Do you have libhdf5_hl.so anywhere on your system after installing
the libhdf5-serial package? According to this
http://packages.ubuntu.com/lucid/i386/libhdf5-serial-1.8.4/filelist
it should be installed in /usr/lib.
Yes it is in /usr/lib.
Also, if I read this
http://packages.ubuntu.com/natty/libnetcdf6
correctly, just installing the libnetcdf6 and libnetcdf-dev
packages should be all you need to do - they depend on libhdf5-serial.
-Jeff
Both packages are installed.
MR
from Scientific.IO <http://scientific.io.net/>.NetCDF import
NetCDFFile
MR
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