Hi I have been aligning some bacterial genomes, 3 or 4 different species with some serovars of each - about 10 in total. I couldn't do this before I found Mauve, so thankyou.
Anyway, the results are encouraging, but I have an aesthetic problem! As the genomes are circular the sequence starts at different places for different genomes. Although this does not affect the alignment, it does mean that I get a complete mess of lines joining up alignment blocks in the graphical display. Is there any function within Mauve to set the start point of the sequence to align (I assume not - I can't find one), or horizontally scroll the graphical display of one genome relative to the others? Alternatively, do you know of another tool which could do this before I align? I could write some perl to reorder the sequences, but I'm sure someone must have faced this problem before! Thanks Lee ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier. Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
