Mauve users, I have used Mauve to align a set of syntenic regions in a group of 7 mammals for a colleague's manuscript. One of the reviewers requested additional information about the use of the HOXD scoring model. Is this documented anywhere (I can't find it in the manual)? From what I can tell, it is used for assigning penalties for mismatches, gaps, etc... Is there any additional information on how the scoring matrix was calculated and its appropriateness for various tpyes of analysis?
Sincerely, Sean Conlan NIH/NHGRI ------------------------------------------------------------------------------ Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
