Hi,
I have just run an alignment with progessiveMauve (using the Mauve interface -
version 2.3.1) , but I cannot figure out where to find the "LCB boundary file"
that is mentioned in the user guide
(http://bioweb2.pasteur.fr/docs/Mauve/mauve_user_guide.pdf). I have checked the
option "Determine LCBs" in the parameters box, and can visualise them in the
viewer, so I guess the information is somewhere. But where??!! Could anyone
tell me where I can find this file or the information it contained (that are
the coordinates of the LCB - not the matches listed in the alignment/backbone
file) ?
Here are the files I have:
test.xmfa
test.backbone
test.bbcols
test.guide_tree
test.orthologs
test.permutations
Thanks for your help!
Marion
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