Hi,
I have installed Mauve today and am in the progress of learning to use 
progressiveMauve to compare five prokaryotic genomes - my first attempts at 
using progressiveMauve gave me the following message consistently. I wish to 
find out what the error code means and how this can be fixed please?
Many thanks,
Anna
OS name is: Windows 7 arch: amd64Executing: win64\progressiveMauve 
--output=C:\Users\Acer\Desktop\Genomes\P42\WGS_Alignment 
--output-guide-tree=C:\Users\Acer\Desktop\Genomes\P42\WGS_Alignment.guide_tree 
--backbone-output=C:\Users\Acer\Desktop\Genomes\P42\WGS_Alignment.backbone 
C:\Users\Acer\Desktop\Genomes\Seq1.fasta 
C:\Users\Acer\Desktop\Genomes\Seq2.fasta 
C:\Users\Acer\Desktop\Genomes\Seq3.fasta 
C:\Users\Acer\Desktop\Genomes\Seq4.fasta 
C:\Users\Acer\Desktop\Genomes\Seq5.fasta Storing raw sequence at 
C:\Users\Acer\AppData\Local\Temp\rawF7A6.tmpSequence loaded 
successfully.C:\Users\Acer\Desktop\Genomes\Seq1.fasta 6382774 base 
pairs.Storing raw sequence at 
C:\Users\Acer\AppData\Local\Temp\rawFE9A.tmpSequence loaded 
successfully.C:\Users\Acer\Desktop\Genomes\Seq2.fasta 6609081 base 
pairs.Storing raw sequence at 
C:\Users\Acer\AppData\Local\Temp\raw9E.tmpSequence loaded 
successfully.C:\Users\Acer\Desktop\GenomesSeq3.fasta 6633254 base pairs.Storing 
raw sequence at C:\Users\Acer\AppData\Local\Temp\raw179.tmpSequence loaded 
successfully.C:\Users\Acer\Desktop\Genomes\Seq4.fasta 6519850 base 
pairs.Storing raw sequence at C:\Users\Acer\AppData\Local\Temp\raw4A5.tmp
This application has requested the Runtime to terminate it in an unusual 
way.Please contact the application's support team for more information.Exited 
with error code: 3
                                          
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