Heia, I am having troubles running the stripGapColumns script on my mauve output file on my Mac. so I made a small test file based on some of the LCB's in my genome alignment. It looks like there might be extra 'invisable' characters in my file; with 'dos' line breaks I get Error in XMFA file format Before line 161 Expecting 83 characters based on defline Actually read 153 characters of sequence terminate called after throwing an instance of 'genome::gnException' Aborted
With Mac or Unix line breaks I get 'Segmentation 11'. I was wondering if anyone could share a file that is supposed to work so that I can see if I can run it properly. Thanks for any help or suggestions, Camilla -- Camilla L. Nesbø University of Alberta Biological Sciences 116 street and 85 Avenue Edmonton, Alberta T6G2R3 +1 780 604 3080 and CEES, Dept. of Biology, University of Oslo P.O. Box 1066 Blindern NO-0316 Oslo Norway ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
