Hi Jingjing, Please try using one of the more recent snapshot releases of Mauve available here: http://gel.ahabs.wisc.edu/mauve/snapshots/
for example this build for linux: http://gel.ahabs.wisc.edu/mauve/snapshots/2012/2012-06-07/linux-x64/mauve_linux_snapshot_2012-06-07.tar.gz The dependency on an X11 environment should be removed from the snapshot builds. Best, -Aaron On Fri, 2013-08-02 at 06:41 +1000, Jingjing Jin wrote: > Dear all, > > I am interested about using mauvealigner to reordering the contig > using a reference genome. > > However, when I try to use it on terminal by a unix server, like this: > > java -Xmx500m -cp Mauve.jar org.gel.mauve.contigs.ContigOrderer > -output results_dir -ref test/chloroplast-eA.fasta -draft > test/choloroplast-dnA.fasta > > > however, an error like this: > > No X11 DISPLAY variable was set > > Can I just run Mauve on terminal? > > Can anyone help me fix this error? > > Thanks! > > Jingjing > > > > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Get your SQL database under version control now! Version control is standard for application code, but databases havent caught up. So what steps can you take to put your SQL databases under version control? Why should you start doing it? Read more to find out. http://pubads.g.doubleclick.net/gampad/clk?id=49501711&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
