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• [Mauve-users] New SNP file format? Raymond Wan
  • Re: [Mauve-users] New SNP file format? Joseph Fass
  • Re: [Mauve-users] New SNP file format? Raymond Wan
• Re: [Mauve-users] Mauve2.4...Java problem and new build David Boyd
• [Mauve-users] Mauve aligner without SML files Norhan Mahfouz
  • Re: [Mauve-users] Mauve aligner without SML files Aaron Darling
• [Mauve-users] Mauve 2.3.1 not detecting Java Fatemah H.
  • Re: [Mauve-users] Mauve 2.3.1 not detecting Java Aaron Darling
  • Re: [Mauve-users] Mauve 2.3.1 not detecting Java Fatemah H.
• Re: [Mauve-users] Further analysis of progressiveMauve .backbone file Weigand, Michael Richard (CDC/OID/NCIRD) (CTR)
• [Mauve-users] exited with error 134 cav00004
• Re: [Mauve-users] 2.4 problems..Java NML_ARNI
  • Re: [Mauve-users] 2.4 problems..Java Marco A. Riojas
  • Re: [Mauve-users] 2.4 problems..Java Aaron Darling
• [Mauve-users] Mauve 2.4 troubles...Java? David Boyd
  • Re: [Mauve-users] Mauve 2.4 troubles...Java? Aaron Darling
• [Mauve-users] ERROR CODE 2 : Mauve 2.40 Swetha Gopal
  • Re: [Mauve-users] ERROR CODE 2 : Mauve 2.40 Aaron Darling
• [Mauve-users] Error 134 : Help required Swetha Gopal
  • Re: [Mauve-users] Error 134 : Help required Aaron Darling
  • Re: [Mauve-users] Error 134 : Help required Swetha Gopal
• [Mauve-users] Further analysis of progressiveMauve .backbone file Weigand, Michael Richard (CDC/OID/NCIRD) (CTR)
  • Re: [Mauve-users] Further analysis of progressiveMauve .backbone file Aaron Darling
• [Mauve-users] Error message "scoring error" depends on input order Franz Baumdicker
  • Re: [Mauve-users] Error message "scoring error" depends on input order Aaron Darling
  • Re: [Mauve-users] Error message "scoring error" depends on input order Aaron Darling
• [Mauve-users] mauveAligner exited with an error code cav00004
  • Re: [Mauve-users] mauveAligner exited with an error code Aaron Darling
  • Re: [Mauve-users] mauveAligner exited with an error code cav00004
• Re: [Mauve-users] confirm eb226cc71fa98d83afe0dbb3474abea90f7e23e9 Walter, Mathias
• Re: [Mauve-users] Mauve downloading problems in MacOX Yosemite + Windows Exited error code:3 cav00004
  • Re: [Mauve-users] Mauve downloading problems in MacOX Yosemite + Windows Exited error code:3 Aaron Darling
  • Re: [Mauve-users] Mauve downloading problems in MacOX Yosemite + Windows Exited error code:3 Tom Geissmann
  • Re: [Mauve-users] Mauve downloading problems in MacOX Yosemite + Windows Exited error code:3 cav00004
• [Mauve-users] Mauve downloading problems in MacOX Yosemite cav00004
  • Re: [Mauve-users] Mauve downloading problems in MacOX Yosemite Aaron Darling
• [Mauve-users] stripSubsetLCBs link Taryn Athey
  • Re: [Mauve-users] stripSubsetLCBs link Raymond Wan
  • Re: [Mauve-users] stripSubsetLCBs link Aaron Darling
• [Mauve-users] Mauve 2.4.0 is released Aaron Darling
• [Mauve-users] Alignment of 78 E. faecalis genomes Hullahalli, Karthik
  • Re: [Mauve-users] Alignment of 78 E. faecalis genomes Aaron Darling
  • Re: [Mauve-users] Alignment of 78 E. faecalis genomes Анастасия Калинина
  • Re: [Mauve-users] Alignment of 78 E. faecalis genomes Peter Hoyt
• [Mauve-users] alignment of 15 genomes with varying degrees of similarity Anja Friedrich
  • Re: [Mauve-users] alignment of 15 genomes with varying degrees of similarity Aaron Darling
  • Re: [Mauve-users] alignment of 15 genomes with varying degrees of similarity Anja Friedrich
  • Re: [Mauve-users] alignment of 15 genomes with varying degrees of similarity Aaron Darling
• [Mauve-users] Progressive MAUVE guide tree units? Peter Hoyt
  • Re: [Mauve-users] Progressive MAUVE guide tree units? Aaron Darling
• [Mauve-users] problem with Mauve assembly metrics Raquel Lo
  • Re: [Mauve-users] problem with Mauve assembly metrics Aaron Darling
• [Mauve-users] mauveAligner vs progressive Mauve Tom Geissmann
  • Re: [Mauve-users] mauveAligner vs progressive Mauve Aaron Darling
• [Mauve-users] alignment complete. error when loading Amarin Cogburn
  • Re: [Mauve-users] alignment complete. error when loading Raymond Wan
  • Re: [Mauve-users] alignment complete. error when loading Amarin Cogburn
  • Re: [Mauve-users] alignment complete. error when loading Aaron Darling
• [Mauve-users] Moving to Clonal Frame, Clonal Origin and basic questions Peter Hoyt
• [Mauve-users] Problem running progressiveMauve on linux server Juan Esteban Gallo
• [Mauve-users] similarity profile Hannah Fehlner-Peach
  • Re: [Mauve-users] similarity profile Aaron Darling
• [Mauve-users] Annotations and Contigs Stephanie S Momeni
  • Re: [Mauve-users] Annotations and Contigs Joseph Fass
  • Re: [Mauve-users] Annotations and Contigs Aaron Darling
  • Re: [Mauve-users] Annotations and Contigs Shlomo Blum
  • Re: [Mauve-users] Annotations and Contigs Aaron Darling
• [Mauve-users] SNPs from a core.xfma genome Ybazeta, Gustavo , Dr.
  • Re: [Mauve-users] SNPs from a core.xfma genome Raymond Wan
  • Re: [Mauve-users] SNPs from a core.xfma genome Ybazeta, Gustavo , Dr.
• [Mauve-users] Missing shortcut Marco A. Riojas
  • Re: [Mauve-users] Missing shortcut Aaron Darling
• [Mauve-users] Export Orthologs issue heinze
  • Re: [Mauve-users] Export Orthologs issue Aaron Darling
• [Mauve-users] GUI XMFA versus text XMFA Carm C
  • Re: [Mauve-users] GUI XMFA versus text XMFA Aaron Darling
• [Mauve-users] java error occurred during alignment with progressive Mauve Tina Lan
  • Re: [Mauve-users] java error occurred during alignment with progressive Mauve Aaron Darling
• [Mauve-users] MauveAligner version 1 vs 2 Bhavjinder Dhillon
  • Re: [Mauve-users] MauveAligner version 1 vs 2 Aaron Darling
• [Mauve-users] Error installing in Windows 7 x64: Java not found Peter Hoyt
  • Re: [Mauve-users] Error installing in Windows 7 x64: Java not found Peter Hoyt
• [Mauve-users] MAUVE (annotations not loaded) cav00004
  • Re: [Mauve-users] MAUVE (annotations not loaded) Aaron Darling
• [Mauve-users] Any Plans for an Official Release? Julie Shay
  • Re: [Mauve-users] Any Plans for an Official Release? Aaron Darling
  • Re: [Mauve-users] Any Plans for an Official Release? Julie Shay
  • Re: [Mauve-users] Any Plans for an Official Release? Aaron Darling
  • Re: [Mauve-users] Any Plans for an Official Release? Julie Shay
  • Re: [Mauve-users] Any Plans for an Official Release? Aaron Darling
  • Re: [Mauve-users] Any Plans for an Official Release? Julie Shay
  • Re: [Mauve-users] Any Plans for an Official Release? Aaron Darling
  • Re: [Mauve-users] Any Plans for an Official Release? Julie Shay
• [Mauve-users] ContigOrderer from command line Jonas Torgny Larsson
  • Re: [Mauve-users] ContigOrderer from command line Aaron Darling
• [Mauve-users] Quetion regarding LCB Saleh T
  • Re: [Mauve-users] Quetion regarding LCB Aaron Darling
• [Mauve-users] phylogeny Manal Farid
  • Re: [Mauve-users] phylogeny Aaron Darling
• [Mauve-users] Exception FileNotOpened error with progressiveMauve Kevin Kocot
  • [Mauve-users] Floating point exception with progressiveMauve Kevin Kocot
  • Re: [Mauve-users] Floating point exception with progressiveMauve Aaron Darling
• [Mauve-users] How to activate mauve_assembly_metrics within Mauve GUI Tina Lan
  • Re: [Mauve-users] How to activate mauve_assembly_metrics within Mauve GUI Aaron Darling
• [Mauve-users] How to run Mauve in batch mode Hiren Ghosh
  • Re: [Mauve-users] How to run Mauve in batch mode Aaron Darling
• [Mauve-users] stripSubsetLCBs wrongly extracted blocks Zhang,Yunzeng
  • Re: [Mauve-users] stripSubsetLCBs wrongly extracted blocks Aaron Darling
• [Mauve-users] MCM unordered contigs Mariam Iskander
  • Re: [Mauve-users] MCM unordered contigs Aaron Darling
  • Re: [Mauve-users] MCM unordered contigs Manal Farid
  • Re: [Mauve-users] MCM unordered contigs Aaron Darling
• [Mauve-users] Exited with error code: -10 Lunwen Qian
  • Re: [Mauve-users] Exited with error code: -10 Aaron Darling
• [Mauve-users] exited with error code: 2 Eric
  • Re: [Mauve-users] exited with error code: 2 Aaron Darling
• [Mauve-users] Question about xmfa2maf Raymond Wan
  • Re: [Mauve-users] Question about xmfa2maf Aaron Darling
  • Re: [Mauve-users] Question about xmfa2maf Raymond Wan
  • Re: [Mauve-users] Question about xmfa2maf Aaron Darling
  • Re: [Mauve-users] Question about xmfa2maf Raymond Wan
• [Mauve-users] Fishing the unique sequence from alignment Zhou, K (mmb)
  • Re: [Mauve-users] Fishing the unique sequence from alignment Aaron Darling
  • Re: [Mauve-users] Fishing the unique sequence from alignment Shlomo Blum
• [Mauve-users] ArrayIndexOutOfBoundsException Fatma Onmus
  • Re: [Mauve-users] ArrayIndexOutOfBoundsException Aaron Darling
  • [Mauve-users] SNP output file Manal Farid
  • Re: [Mauve-users] SNP output file Raymond Wan
  • Re: [Mauve-users] SNP output file Manal Farid
• [Mauve-users] Question about the SNP file Raymond Wan
• [Mauve-users] problem with Mauve 2.3.1 Alejandro Acosta González
  • Re: [Mauve-users] problem with Mauve 2.3.1 Aaron Darling
• [Mauve-users] Mauve error code: 3 Lackner Gerald
  • Re: [Mauve-users] Mauve error code: 3 Aaron Darling
  • Re: [Mauve-users] Mauve error code: 3 Lackner Gerald
  • Re: [Mauve-users] Mauve error code: 3 Guy Plunkett III
• [Mauve-users] MAUVE : extract orthologs fcerutti
  • Re: [Mauve-users] MAUVE : extract orthologs Aaron Darling
• [Mauve-users] Fw:Re: question about mauve alignment usermxy
  • Re: [Mauve-users] Fw:Re: question about mauve alignment Aaron Darling
• [Mauve-users] Negative values on backbone files Eddie
  • Re: [Mauve-users] Negative values on backbone files Aaron Darling
• [Mauve-users] problems trying to run Mauve 2.3.1 on a Mac OS X 10.8.5 Santiago Castillo
  • Re: [Mauve-users] problems trying to run Mauve 2.3.1 on a Mac OS X 10.8.5 Guy Plunkett III
• [Mauve-users] Edit the alignment Zhou, K (mmb)
• [Mauve-users] From Backbone file to sequences Laura Perlaza
  • Re: [Mauve-users] From Backbone file to sequences Aaron Darling
• [Mauve-users] Fw: SNP exporter Fatma Onmus
  • Re: [Mauve-users] Fw: SNP exporter Aaron Darling
• [Mauve-users] Contigs reordering with mauve! Akinrinade, Oyediran O
  • Re: [Mauve-users] Contigs reordering with mauve! Aaron Darling
• [Mauve-users] Fwd: Mauve - SNP extraction from command line Leonor Sanchez
  • Re: [Mauve-users] Fwd: Mauve - SNP extraction from command line Aaron Darling
  • Re: [Mauve-users] Fwd: Mauve - SNP extraction from command line Leonor Sanchez
  • Re: [Mauve-users] Fwd: Mauve - SNP extraction from command line Aaron Darling
• [Mauve-users] BAM's in Mauve? Joseph Fass
  • Re: [Mauve-users] BAM's in Mauve? Aaron Darling
• [Mauve-users] profile alignment in MAUVE Tauqeer Alam
  • Re: [Mauve-users] profile alignment in MAUVE Aaron Darling
• [Mauve-users] bp and genome contents matrices Shlomo Blum
• [Mauve-users] annotations no loaded Monteagudo, Andrea
• [Mauve-users] progressive Mauve for 54 bacterial genomes Gabriel Andres Gallina Nizzo
  • Re: [Mauve-users] progressive Mauve for 54 bacterial genomes Aaron Darling
• [Mauve-users] annotations and names karen power
  • Re: [Mauve-users] annotations and names Guy Plunkett III
• [Mauve-users] scaffolding vasundhara paliwal
  • [Mauve-users] islands file Cristell Navarro
  • Re: [Mauve-users] islands file Aaron Darling
• [Mauve-users] mauve contig mover from the command line Silvia Argimon
  • Re: [Mauve-users] mauve contig mover from the command line Joseph Fass
  • Re: [Mauve-users] mauve contig mover from the command line Silvia Argimon
  • Re: [Mauve-users] mauve contig mover from the command line Aaron Darling
  • Re: [Mauve-users] mauve contig mover from the command line Aaron Darling
• [Mauve-users] How long would it take to align 48 bacterial genomes? Zhao Jin
  • Re: [Mauve-users] How long would it take to align 48 bacterial genomes? Aaron Darling
• [Mauve-users] confident alignments? Söderman Jan
  • Re: [Mauve-users] confident alignments? Guy Plunkett III
  • Re: [Mauve-users] confident alignments? Söderman Jan
  • Re: [Mauve-users] confident alignments? Joseph Fass
• [Mauve-users] .bbcols Cristell Navarro
• [Mauve-users] Mauve download for OSX 10.8.4 Danny Miller
  • Re: [Mauve-users] Mauve download for OSX 10.8.4 Aaron Darling
• [Mauve-users] Out of memory error Brianna Flynn
  • Re: [Mauve-users] Out of memory error Aaron Darling
• [Mauve-users] progressiveMauve speed Brianna Flynn
  • Re: [Mauve-users] progressiveMauve speed Aaron Darling
• [Mauve-users] contigs reordering and multiple genome alignment Shlomo Blum
  • Re: [Mauve-users] contigs reordering and multiple genome alignment Aaron Darling
• [Mauve-users] configure should respect --libdir and use mktemp Martin Mokrejs
• [Mauve-users] Progressive Mauve Error Brianna Flynn
  • Re: [Mauve-users] Progressive Mauve Error Aaron Darling
• [Mauve-users] loss of information in WGA using progressiveMauve Pär Larsson
  • Re: [Mauve-users] loss of information in WGA using progressiveMauve Aaron Darling
• Re: [Mauve-users] Mauve strips U residues from RNA sequences Guy Plunkett III
• [Mauve-users] mauve gets into "infinite" loop Guy Plunkett III
• [Mauve-users] Mauve aligning genomes error code -1073741676 Zhao Jin
  • Re: [Mauve-users] Mauve aligning genomes error code -1073741676 Aaron Darling
• [Mauve-users] order of the contig Jingjing Jin
  • Re: [Mauve-users] order of the contig Aaron Darling
  • [Mauve-users] how to view the aligned sequence, please Manal Farid

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