Hi Zhao, The aligner is not able to open the sequence files for one reason or another, it's not clear why. You might try checking the access permissions for those files & directories, or simply downloading the data & aligner to a different computer (linux?) and running it there.
Best, -Aaron On Thu, 2013-08-22 at 04:42 +1000, Zhao Jin wrote: > Hi list, > > > I am just starting to use Mauve to align some bacterial genomes. I had > Mauve 2.3.1 installed on win7. I supplied Mauve with two genbank > files, each containing multiple scaffolds. I used the 'Align with > progressiveMauve' option for this purpose, and got the following > error: > > > ''OS name is: Windows 7 arch: amd64 > Executing: > win64\progressiveMauve --output=C:\Users\zoey\Downloads\m > --output-guide-tree=C:\Users\zoey\Downloads\m.guide_tree > --backbone-output=C:\Users\zoey\Downloads\m.backbone C:\Users\zoey > \Downloads\22350.gbk C:\Users\zoey\Downloads\22396.gbk > Exception FileNotOpened thrown from > Unknown() in ..\libGenome\gnFileSource.cpp 67 > Called by Unknown() > Exited with error code: -1073741676'' > > > I also tried fasta files, but got the same error. > > > I have Sun Java installed. > > > Could someone help me with this error, why, and how to fix it? Thanks > a lot! > > > Zhao > > > -- > Zhao JIN > Ph.D. Candidate > Field of Microbiology, Cornell University > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
