Aaron,
I can’t seem to get the latest version of Mauve to run on my windows laptop
or workstation. I've tried alignments using two different bacterial
genomes but the program exits with the same error code when writing the
guide tree each time. Any input would be appreciated. Thanks.
Running alignment.
Executing
win64\progressiveMauve
--output=K12_TolC_Alignment
--output-guide-tree=K12_TolC_Alignment.guide_tree
--backbone-output=K12_TolC_Alignment.backbone
C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa
C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas
C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1401.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa 4686137 base pairs.
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1662.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas 4715635 base pairs.
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1808.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas 4710259 base pairs.
Using weight 15 mers for initial seeds
Creating sorted mer list
Create time was: 2 seconds.
Creating sorted mer list
Create time was: 2 seconds.
Creating sorted mer list
Create time was: 2 seconds.
0%..1%..2%..3%..4%..5%..6%..7%..8%..9%..10%..
11%..12%..13%..14%..15%..16%..17%..18%..19%..20%..
21%..22%..23%..24%..25%..26%..27%..28%..29%..30%..
31%..32%..33%..34%..35%..36%..37%..38%..39%..40%..
41%..42%..43%..44%..45%..46%..47%..48%..49%..50%..
51%..52%..53%..54%..55%..56%..57%..58%..59%..60%..
61%..62%..63%..64%..65%..66%..67%..68%..69%..70%..
71%..72%..73%..74%..75%..76%..77%..78%..79%..80%..
81%..82%..83%..84%..85%..86%..87%..88%..89%..90%..
91%..92%..93%..94%..95%..96%..97%..98%..99%..done.
using default bp penalty: 155158
using default bp estimate min score: 465475
Starting with 1047 multi-matches
Computing genome content distance matrix...
Genome conservation distance matrix:
0 0.0771738 0.0795964
0.0771738 0 0.0060033
0.0795964 0.0060033 0
Writing guide tree to K12_TolC_Alignment.guide_tree
Exited with error code: -1073741819
------------------------------------------------------------------------------
BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT
Develop your own process in accordance with the BPMN 2 standard
Learn Process modeling best practices with Bonita BPM through live exercises
http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_
source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF
_______________________________________________
Mauve-users mailing list
Mauve-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mauve-users