Hi everybody, First try with progressiveMauve, and I got this error.
I'm trying to align two de novo assembly genome of Brassica napus on its reference (850 MB). It seems that something goes wrong on the first steps. ./progressiveMauve --seed-family --seed-weight 41 $REF_FASTA $ASS_PATH/aviso.fa $ASS_PATH/tower.fa > run.log 2> run.err This list makes reference to memory or version pb for this error. I launched the command on a cluster with a lot of memory. ./progressiveMauve --version progressiveMauve build date Feb 13 2015 at 05:57:13 I tried with default size for seed-weight, it didn't change the error. Any help ? Sébastien ------ run.log Storing raw sequence at /tmp/rawseq11609.000 Sequence loaded successfully. Brassica_napus_v4.1.chromosomes.fasta 850292103 base pairs. Storing raw sequence at /tmp/rawseq11609.001 Sequence loaded successfully. aviso.fa 699132284 base pairs. Storing raw sequence at /tmp/rawseq11609.002 Sequence loaded successfully. tower.fa 690335263 base pairs. Creating sorted mer list **** run.err Error creating sorted mer list terminate called after throwing an instance of 'genome::gnException' (code error 134) ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
