Hi,
I recently updated to the latest version of MITK and noticed that the
orthogonal slice widget is not properly working anymore for my data sets.
I'm working with my own itk file reader that is used instead of the itk
filereader. Apart from that, everything is the original MITK-code (so an
image node is created by the mitkDataTreeNodeFactory and so on).
I've attached a screenshot of the result of the slice widget:
It looks like the widget does not know the correct extends of the image
that is loaded or something similar, but I have really no idea what
could cause the problem. In addition, it worked well so far with the
former version of MITK.
Does anyone have an idea how I can fix this problem or what change in
the MITK source might have caused this behavior?
Thanks a lot,
best,
Marius
P.S.: below you find the log of the datamanager for the data set in case
it might be of use:
--------------------DataInfo--------------------
Microscanning1
Image (0724EB50)
PixelType: unsigned short
BitsPerElement: 16
NumberOfComponents: 1
BitsPerComponent: 16
Dimension: 3
Dimensions: 40000 40 40
TimeSlicedGeometry: TimeSlicedGeometry (070CBD98)
IndexToWorldTransform: ScalableAffineTransform (0722D248)
RTTI typeinfo: class itk::ScalableAffineTransform<float,3>
Reference Count: 2
Modified Time: 10396
Debug: Off
Observers:
none
Matrix:
0.0025 0 0
0 2.5 0
0 0 2.5
Offset: [0, 0, 0]
Center: [0, 0, 0]
Translation: [0, 0, 0]
Inverse:
400 0 0
0 0.4 0
0 0 0.4
Singular: 0
Scale : 1 1 1
MatrixScale : 1 1 1
BoundingBox: Object (0722E380)
RTTI typeinfo: class itk::BoundingBox<unsigned
long,3,float,class itk::VectorContainer<unsigned long,class
itk::Point<float,3> > >
Reference Count: 1
Modified Time: 66319
Debug: Off
Observers:
none
Bounding Box: ( 0,40000 0,40 0,40 )
Origin: [0, 0, 0]
ImageGeometry: 1
Spacing: [0.0025, 2.5, 2.5]
TimeBounds: [-3.40282e+038, 3.40282e+038]
RTTI typeinfo: class mitk::TimeSlicedGeometry
Reference Count: 1
Modified Time: 10515
Debug: Off
Observers:
none
EvenlyTimed: 1
TimeSteps: 1
GetGeometry3D(0): SlicedGeometry3D (043BC8B8)
IndexToWorldTransform: ScalableAffineTransform (0722D248)
RTTI typeinfo: class itk::ScalableAffineTransform<float,3>
Reference Count: 2
Modified Time: 10396
Debug: Off
Observers:
none
Matrix:
0.0025 0 0
0 2.5 0
0 0 2.5
Offset: [0, 0, 0]
Center: [0, 0, 0]
Translation: [0, 0, 0]
Inverse:
400 0 0
0 0.4 0
0 0 0.4
Singular: 0
Scale : 1 1 1
MatrixScale : 1 1 1
BoundingBox: Object (043649E8)
RTTI typeinfo: class itk::BoundingBox<unsigned
long,3,float,class itk::VectorContainer<unsigned long,class
itk::Point<float,3> > >
Reference Count: 1
Modified Time: 10309
Debug: Off
Observers:
none
Bounding Box: ( 0,40000 0,40 0,40 )
Origin: [0, 0, 0]
ImageGeometry: 1
Spacing: [0.0025, 2.5, 2.5]
TimeBounds: [-3.40282e+038, 3.40282e+038]
RTTI typeinfo: class mitk::SlicedGeometry3D
Reference Count: 1
Modified Time: 10469
Debug: Off
Observers:
none
EvenlySpaced: 1
DirectionVector: [0, 0, 1]
Slices: 40
GetGeometry2D(0): PlaneGeometry (043AB320)
IndexToWorldTransform: ScalableAffineTransform (072307E0)
RTTI typeinfo: class itk::ScalableAffineTransform<float,3>
Reference Count: 1
Modified Time: 10456
Debug: Off
Observers:
none
Matrix:
0.0025 0 0
0 2.5 0
0 0 2.5
Offset: [0, 0, 0]
Center: [0, 0, 0]
Translation: [0, 0, 0]
Inverse:
400 0 0
0 0.4 0
0 0 0.4
Singular: 0
Scale : 1 1 1
MatrixScale : 1 1 1
BoundingBox: Object (07277D10)
RTTI typeinfo: class itk::BoundingBox<unsigned
long,3,float,class itk::VectorContainer<unsigned long,class
itk::Point<float,3> > >
Reference Count: 1
Modified Time: 10466
Debug: Off
Observers:
none
Bounding Box: ( 0,40000 0,40 0,1 )
Origin: [0, 0, 0]
ImageGeometry: 1
Spacing: [0.0025, 2.5, 2.5]
TimeBounds: [-3.40282e+038, 3.40282e+038]
RTTI typeinfo: class mitk::PlaneGeometry
Reference Count: 1
Modified Time: 10516
Debug: Off
Observers:
none
ScaleFactorMMPerUnitX: 0.0025
ScaleFactorMMPerUnitY: 2.5
Normal: [0, 0, 2.5]
Microscanning1
----------------End of DataInfo-----------------
-------------------------------------------------------------------------
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