Hi Jesse, MITK can read nifti data when it is formatted like FSL nifty, i.e. with a .bvals file containing the b values of all volumes and a .bvecs file defining the directions of the diffusion encoding gradients (http://fsl.fmrib.ox.ac.uk/fslcourse/). For MITK to recognise a nifty dataset as diffusion, .nii.gz must be replaced by .fslgz (or .nii by .fsl). You can find more details here: http://docs.mitk.org/nightly-qt4/org_mitk_gui_qt_diffusionimaging.html#QmitkDiffusionImagingUserManualFslImport
Best Regards Thomas -------- Original-Nachricht -------- Betreff: [mitk-users] Tractography of a DWI Phantom Datum: Thu, 28 Mar 2013 09:56:35 +0100 Von: Jesse Ross-Jones <[email protected]><mailto:[email protected]> An: mitk-users <[email protected]><mailto:[email protected]> Hi, I am trying to use MITK to track the fibers in a phantom (data available here http://www.lnao.fr/spip.php?article112). However when I import the nifti file into MITK it appears it is not recognized as a DWI volume. How do I import properly, or how do I tell MITK that it is a DWI volume? Best Regards Jesse ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
